Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1732 ATGGGTGCTCCAAAGCAAAAATGGACCGCTGAAGAAGAAGCGGCACTGAAAGCTGGAGTAATCAAACATGGGGCAGGAAAGTGGCGCACCATACTTACAGACCCAGAGTTCAGTGCTATTTTGCGCATGCGTTCAAATGTAGATCTAAAGGATAAATGGAGGAATATAAATGTGACTGCAATATGGGGTTCCAGACAGAAGGCAAAGCTTGCGCTTAAAAGGAACCTACCAGCCCCCAAAAATGATAATCATTTGGCATTGAGTACTGCTGTTCAACATGGTGAAGAAGTTCTTGATACTAAGCCTCTGTCAGTTGTGGGGGGAATTTCTCAGTCTGCTATTCCAAAAGAAGAAATATCTAGGTTGGATAATTTTATATTAGAGGCAATTATCAATTTGAAGGAGCCAAAGGGTACTGACAGGGCTGCTATTGCTGCTTACATAGAGGAGCATTATTGCTCTCCACCAAACCTCAGAAAGTTATTGTCAACAAAATTGAAGCATATGGTGGCTAGTGGCAAATTGACTAAGGTAAAACACAAGTACAGGATCGCTCCAAGTTCTGCACTCTCTGAGAAAAGAAGACACTCTAACTTGTTACTCCTGGAAGGGAGGCCCAAGGATTCTCCAAAAGTGGAGAAAACAAATGTTAACATCCTTTCAAAATCTCAGATTGATGCAGAGCTATCAAAAATGAGGAGCGTGACAGCCCAAGAAGCTGCTGTAGCTGCCGCAAAGGCAGTTGCTGAAGCAGAAGCTGCAATTGCTGAGGCAGAGGCAGCAGCTAGGGAGGCAGAAGCTGCAGAAGCTGAAGCTGAGGCCGCACAAGTGTTTGCAAAAGCAGCAATAAAAGCTCTAAAATGCAGAACTCTACAAATTTGATGGTGTGAACATGAGGCAGCATCGTCGCAAGCATTCCTCTATTAG 927 0.4401 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKNDNHLALSTAVQHGEEVLDTKPLSVVGGISQSAIPKEEISRLDNFILEAIINLKEPKGTDRAAIAAYIEEHYCSPPNLRKLLSTKLKHMVASGKLTKVKHKYRIAPSSALSEKRRHSNLLLLEGRPKDSPKVEKTNVNILSKSQIDAELSKMRSVTAQEAAVAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAAQVFAKAAIKALKCRTLQIXWCEHEAASSQAFLY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1732 308 CDD H15 126 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi12g1732 308 FunFam Telomere repeat-binding factor 1 2 58 - -
Mibi12g1732 308 CDD SANT_TRF 6 57 - -
Mibi12g1732 308 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Mibi12g1732 308 SMART sant 4 59 IPR001005 -
Mibi12g1732 308 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi12g1732 308 SUPERFAMILY "Winged helix" DNA-binding domain 116 195 IPR036390 -
Mibi12g1732 308 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Mibi12g1732 308 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Mibi12g1732 308 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi12g1732 308 Coils Coil 241 278 - -
Mibi12g1732 308 Gene3D - 2 59 - -
Mibi12g1732 308 Gene3D - 117 196 IPR036388 -
Mibi12g1732 308 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mibi12g1732 308 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 115 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi12g1732 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1732 Mibi-ChrMibi12 33507742 33511159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1732 1 295 Single Myb Histone (SMH) Gene Family AT5G67580 55.853 5.15e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mibi12g1732 Linker_histone 6.8e-12 CL0123