Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1725 ATGTACCAGCCTTCTAAACGAGACGTCGTTGCTGGCTTCGATGCTGGTGGTGATGGCCAGATTCTAGATCTGGACACCGCCGTCAAGGACGGCGTTTTAGGCGGCGTTGAAGGTGGGATTGTCGGAGCTGGGGCCACCGAGAAATTGGATCTGGGAAAAATGATTCAAGAGCTTGACTTGTCTGAAGTTCCTACAGTGTTTATCTGCCCAATCTCTCTTGAGCCAATGCAAGATCCAGTCACACTGTGTACTGGTCAAACCTACGAGAGGTCCAACATTCTCAAATGGTTCAATTTGGGTCACCTTACTTGTCCTACCACGATGCAAGAGCTATGGGATGATTCCATCACTCCAAATACAACTCTTTATCGTCTGATATTCACTTGGTTTTCTCAAAAGTATCTGTTGATGAAGAAGAGATCGGAAGATGTGCAGGGGAGGGTGTCAGAACTTGTGGAGACGCTGAAGAAAGTGAAGGGTCAAGCTCGAGTTCAAGCACTCAAGGAGCTTCATGATGTGGTGGCTGCTCACTCCACTGCTCGTAAGACAGTCATTGATGAAGGTGGTGTATCTGTTATGTCTTCCTTACTTGGTCCTTTTACTTCCCATGCTGTTGGCTGTGAGGTCATAGGTATACTGGTTTGTTTGACTCTTGATTCTGAATCGAAAAAGAATTTGATGCAACCTGCTAAGCTTTCTTTAATGGTGGACATTTTGAATGAGGGCTCGATTGAGACCAAAATCAATTGCACCCGACTGATTGAGTCATTGATTGAGGATAATGACTTTCGTTCTGAGGTTATTTCAAGCCATAGCCTTTTGGTTGGGCTGATGCGGCTTGTGAAGGATAAGAGACACTCAAACGGGATATTTCCTGGGCTTAGCCTCTTGGGAAAGTTATGCTTACATAAGGAAGTAAAGAATTTGCTTGTGAGTATTGGGGCTGTTGCTCAGCTGGTTGAATTGTTATCTGCTTTGGAGCCAGAATGTTCCGAGTTGGCGCTTTCCATTTTAGATGCGTTGGCATCGATACCGGAAGGCAGAGTAGCGTTGAAGAATTGTTCTAACACCATACCGAATATGGTGAATCACTTGATGAGAATCTCAGAGAACTGTACCCAATATGCATTGTCAATCCTATGGGCTGTGTGCAAGCTTGCTCCTGAGGAGTGCTCATCTGTTGCTTTGGATGCTGGACTTGCTGCAAAGCTGCTCCTTGTCATCCAAAGTGGTTGCAATCCTATATTGAAGCAACAATCTGCTGAGCTTTTGAAGCTGTGTAGTTTGAATTATTCAGATACTATCTTCATTTCCAAATGCAAGCTTACTAGAACCATCCAATGA 1344 0.4472 MYQPSKRDVVAGFDAGGDGQILDLDTAVKDGVLGGVEGGIVGAGATEKLDLGKMIQELDLSEVPTVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHLTCPTTMQELWDDSITPNTTLYRLIFTWFSQKYLLMKKRSEDVQGRVSELVETLKKVKGQARVQALKELHDVVAAHSTARKTVIDEGGVSVMSSLLGPFTSHAVGCEVIGILVCLTLDSESKKNLMQPAKLSLMVDILNEGSIETKINCTRLIESLIEDNDFRSEVISSHSLLVGLMRLVKDKRHSNGIFPGLSLLGKLCLHKEVKNLLVSIGAVAQLVELLSALEPECSELALSILDALASIPEGRVALKNCSNTIPNMVNHLMRISENCTQYALSILWAVCKLAPEECSSVALDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1725 447 CDD RING-Ubox_PUB 67 109 IPR045210 -
Mibi12g1725 447 SUPERFAMILY ARM repeat 233 433 IPR016024 -
Mibi12g1725 447 SUPERFAMILY RING/U-box 58 133 - -
Mibi12g1725 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 135 IPR013083 -
Mibi12g1725 447 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Mibi12g1725 447 Pfam U-box domain 63 133 IPR003613 GO:0004842|GO:0016567
Mibi12g1725 447 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Mibi12g1725 447 PANTHER WDSAM1 PROTEIN 58 433 IPR045185 GO:0061630
Mibi12g1725 447 Gene3D - 136 441 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1725 Mibi-ChrMibi12 33426939 33428282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1725 1 447 U-box Gene Family AT3G49810 73.602 0.0 654