Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1702 ATGGGTTTTGGCGATGCTTCTAGTAGCCCAGGCCTGCACCTTGTTCTAGGGTTAGCCACGACTACTTCTCCATCCAAGCCTGACCATAAAAGCAAGCAAGCCAAGAATCCAACAACTAGTTGTGAGCCATCTTTAACCTTGGCTCTTTCTGCCGAGACTTACACACAAGTTCCTAAAAAGGTTGACTTGAAGAAAAGTTGTGAGGATCCTCTTGACTTTTCCCGCCAAACATCATCGCCACCACACAGCGCCGTCTCATCCTTCTCCGGCGGCGGCAGAGTGAAGAGGGAGAGAGATGTGAGCGGCGAAGAGGTGGAGGCGGCGGAGAGGGTTTCCTCAAGAGGCAGCGATGAAGACGAAGACGGAACCAATGCTAGAAAGAAGCTCCGACTCACCAAACAACAATCCGCCTTATTGGAGGAAAGCTTCAAACAGAACAGCACTCTTAATCCAAAGCAGAAGCAAGCATTAGCCAGGGAACTAAATCTGAGGCCCCGACAAGTTGAAGTGTGGTTCCAAAACCGGAGAGCCAGGACAAAGCTGAAGCAGACGGAGGTGGACTTCGAATTGTTAAAGAAATGTTGTGAGACACTGACGGATGAAAACAGGAGGCTGCAGAAGGAAGTGCAAGAGCTGAAGGCGTTGAAGGTAGCTCAGCCTCTTTACATGGCGGCCACTCTCACCATGTGCCCTTCCTGCGAGAGGCTGGCCGGTGACGGCGCTTCCAAACCTCATTTCTACATGCCCTTTCCTAATCCTTCCGCGGCATGCTGA 774 0.5142 MGFGDASSSPGLHLVLGLATTTSPSKPDHKSKQAKNPTTSCEPSLTLALSAETYTQVPKKVDLKKSCEDPLDFSRQTSSPPHSAVSSFSGGGRVKRERDVSGEEVEAAERVSSRGSDEDEDGTNARKKLRLTKQQSALLEESFKQNSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDFELLKKCCETLTDENRRLQKEVQELKALKVAQPLYMAATLTMCPSCERLAGDGASKPHFYMPFPNPSAAC 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1702 257 Gene3D - 119 187 - -
Mibi12g1702 257 MobiDBLite consensus disorder prediction 72 86 - -
Mibi12g1702 257 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Mibi12g1702 257 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 15 239 - -
Mibi12g1702 257 Pfam Homeobox associated leucine zipper 182 215 IPR003106 GO:0006355|GO:0043565
Mibi12g1702 257 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Mibi12g1702 257 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Mibi12g1702 257 MobiDBLite consensus disorder prediction 1 44 - -
Mibi12g1702 257 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Mibi12g1702 257 MobiDBLite consensus disorder prediction 92 126 - -
Mibi12g1702 257 MobiDBLite consensus disorder prediction 70 126 - -
Mibi12g1702 257 Coils Coil 188 218 - -
Mibi12g1702 257 CDD homeodomain 126 183 IPR001356 GO:0003677
Mibi12g1702 257 FunFam Homeobox-leucine zipper protein 18 109 187 - -
Mibi12g1702 257 SMART HOX_1 124 186 IPR001356 GO:0003677
Mibi12g1702 257 SUPERFAMILY Homeodomain-like 116 183 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1702 Mibi-ChrMibi12 33173316 33174484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1702 1 257 Homeobox Transcription Factor Family AT4G37790 54.639 1.87e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mibi12g1702 Homeodomain 2.1e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1702 12 33173316 33174484 Mibi10g0309 10 4907660 4908950 CCT