Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1670 ATGCCAGTTCCACTTGCTCCTTATCCGACTCCCCCAGCCCCATATACTCCTCCAGCAAATGGTGGACAGAGTCAACTTGTATGTTCTGGGTGTAGAAACCTTTTAATGTATCCTGTTGGAGCCTCCTCTGTTTGTTGTGCTGTTTGCAATGCCGTCACAGGTGTGCCTCCTCCTGGCACAGAAATGGCCCAGTTGGTCTGTGGAGGTTGCCACACTTTACTCATGTACATTCGTGGAGCCACAAGTGTTCAATGTTCTTGCTGTCACACTGTCAATCTAGCTTTGGAAGCAAACCAGGTGGCCCATGTCAATTGTGGGAGCTGCAGGATGCTACTGATGTACCAATATGGAGCAAGATCCGTGAAATGCGCTGTTTGCAATTTTGTGACATCAGTTGGGGTCCCAGCAAGTACGACTGAGCAGAAGTTTAGTACCTAA 438 0.4863 MPVPLAPYPTPPAPYTPPANGGQSQLVCSGCRNLLMYPVGASSVCCAVCNAVTGVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGSCRMLLMYQYGARSVKCAVCNFVTSVGVPASTTEQKFST 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1670 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Mibi12g1670 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 102 132 IPR005735 -
Mibi12g1670 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 25 54 IPR005735 -
Mibi12g1670 145 SUPERFAMILY Multiheme cytochromes 28 126 IPR036280 -
Mibi12g1670 145 Pfam LSD1 zinc finger 28 52 IPR005735 -
Mibi12g1670 145 Pfam LSD1 zinc finger 67 91 IPR005735 -
Mibi12g1670 145 Pfam LSD1 zinc finger 105 129 IPR005735 -
Mibi12g1670 145 PANTHER PROTEIN LSD1 16 53 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1670 Mibi-ChrMibi12 32786911 32788350 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Mibi12g1670 zf-LSD1 1e-11 No_clan