Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1639 ATGGCCGTTCAAGCTCAATACCCCTCCAGTATTCTCTTCCTCAACAGAAACGAACAGGAAGGACATGATTATTCGTTACAACCACAGCCAGGGGGGCTTCTTGATCAGTCTCACATCTTATTCAACAATGGAGGAGGTAGTAACAATAATAATTGTCGAAAGAGAGGAAGAGAATCATCAACGGTCGTATCCCAAACACCTCCCAACGGATTCAATAATAATCCATTCTCCCTGCAATCACAGCCTCCTCCTCCTCCTCAGCTCGTTCAACTCTCCCAACTCCATAACAACCCCCAACAACCCAATGTAGTCTCCACCGGCCTCCGTTTATCCTTCGGTGACCACCAACAACAACAACAACAACAAAGACTACAATTACAACAACAGAATCAACAAGCCAGCCAGCCCTACGCCTTCCTATCTCTATTACCTGATGGATTCGCCTCCCAAATCAAACAACAACGCCATGAAATCGACCAATTCCTCCAAGCCCAGGGAGAACAATTGCGAAGGGCATTAGCGGAGAAGAGGCAGAGGCATTATCGAGCGATTCTAAGCGTAGCGGAGGAATCGGTGACTCGGCGAATGAAAGAGAAGGAGGCAGAGATGGAGAAAGCAACACGAAGGAACGCAGAGTTAGAAGCACGTGCGGCGCAACTTAGCGTGGAGGCGCAGGTTTGGCAGGCGAAGGCGAAGGCACAGGAGGCAACGGCTGCGTCCCTGCAGGCGCAACTGCAACAGGCTATGATGAGCGGTGGGGGTGGTGGTGGGGGTGCGCAGGATAAGGGGTGCTGTTATGTGGAGGACGGAGGGGGGCTATCGTGCGCCGGTGAGGGCCCACCAGAGGACGCCGAGTCGGCGTACGTTGACCCGGAACGAGTCACGAACTCGGGACCCAAGTGTAAAGGGTGTGGGAAGCGAGTTGCCTCCGTGGTGGCATTGCCGTGTCGGCATCTGTGTATGTGTACGGAATGTGACGCGCATTTCAGAGCCTGTCCTGTTTGCCTCAATCTCATAAATTCAACCGTTGAAGTTTTCCTCTCTTAG 1047 0.5244 MAVQAQYPSSILFLNRNEQEGHDYSLQPQPGGLLDQSHILFNNGGGSNNNNCRKRGRESSTVVSQTPPNGFNNNPFSLQSQPPPPPQLVQLSQLHNNPQQPNVVSTGLRLSFGDHQQQQQQQRLQLQQQNQQASQPYAFLSLLPDGFASQIKQQRHEIDQFLQAQGEQLRRALAEKRQRHYRAILSVAEESVTRRMKEKEAEMEKATRRNAELEARAAQLSVEAQVWQAKAKAQEATAASLQAQLQQAMMSGGGGGGGAQDKGCCYVEDGGGLSCAGEGPPEDAESAYVDPERVTNSGPKCKGCGKRVASVVALPCRHLCMCTECDAHFRACPVCLNLINSTVEVFLS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1639 348 Pfam Zinc finger, C3HC4 type (RING finger) 300 340 - -
Mibi12g1639 348 ProSiteProfiles Zinc finger RING-type profile. 301 335 IPR001841 -
Mibi12g1639 348 Coils Coil 189 251 - -
Mibi12g1639 348 MobiDBLite consensus disorder prediction 40 77 - -
Mibi12g1639 348 PIRSF SBP1_RNase_bind 1 348 IPR017066 -
Mibi12g1639 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 348 IPR013083 -
Mibi12g1639 348 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 283 347 - -
Mibi12g1639 348 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 43 345 IPR017066 -
Mibi12g1639 348 MobiDBLite consensus disorder prediction 21 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1639 Mibi-ChrMibi12 32317027 32318371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1639 295 345 C3H Transcription Factor Family AT3G06140 36.364 2.09e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1639 12 32317027 32318371 Mibi10g0367 10 5880930 5881664 CCT
Mibi12g1639 12 32317027 32318371 Mibi12g1639 12 32317027 32318371 ECH