Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1633 ATGTATAGGGGCACGAATGTGGCAGGAAGAACTCGGTCTAGGAAAGAAACCGCTAGAAAACTAAATTTTGAGAATGATATTGAGAGTTGGAAACAACATATGGTTGATGAAATTAAATCTGAAGAAGAATGTTGCTCTGGCAATTCTAAATTTGATGATGATGGTGATGATGATGATGATGATGATGTGATTATAGTTGAAGAAGCTACATCTATACGAGACGAGGAGAATAAGAAGGAATCATTAAGAGGGAAAAAACTTCATGAGAAGTTTCTGGAAATTGTGGCTCAACTTAAAAGGTCTCCAAGTGGATCTTCTGATGGTAGTAATCATGAAGCTGAACCTAGAGGCATGGGAATTGCTAGTAGGACACGATCTTATTCTCGTGTTACTAAATGCAGAAACACTGAAGCAGGTAAATTCAGAAACACTAAAGCAGGGACATCTGATAATCCCATTGATTGTGACGATGAGGAAGAGGAAGAGGAAGAGGAAGAGAAAGAGGCAAATAAAACAGATACGATTGTGTCTCTTGAGAGCTCATATTTCTCAAGTGATGAGGATGAAAGCCCAAAAGTTAGCCTCAAAAGGAGAAGAAAAAAGTCTGATGGGCTCAAGATTCGTCCAGAGAAAATCCATGGTGAGGATGAGGTGTCTCTTATTTCGGTTCCTTCAAATGTTGAGGAAGGAAATCACAAAGTTATGGGGAAGAGAAGAAAGGTGTCACAGCCTTCATTGGAGGAATCAGAATCTGAGGAAGATGAATTGGATAAAATATGGGATCAGATGAATATGGCGGATGGAGATCCAGAGCCAGAGGAAGAAGATGGCTGTGAAGAAGAGGAAGGAATATCAGAGGAAACTTCAGAGCCATCTCTATCGAAACCTCTTGAGGAGTCAGAGTCTGAGGAAGATGAAGCTGATCAGCTTTTTGCTGAGCTGAACGACTATCTGTATAATGAAAAAATCAGGAATGATCAGCTTGAAAATGGTCATTGTGATGAACCACATCCACAAGGGGAACTCAGTATAGCCGCTCGTTGTGAACGAGGGGATCATGAGCCTATTATGATGGATGAAGAAATTGGGATAGTGTGCAAACATTGCAGGCATATAATTCGGGACATCAAGGATTGCGACCTCGAATTTGGCAAATATCCAACAGGAAGACCAAGGAGGAGATACTCTTATTATTCCGAGGACTCTGAGGACTCTCTCTCGCATGACTCCGAGGTTGAAAATTCTGGTCAGCATGATAAATCTTCCGGGCTTATTACCTTTGATTCCGCTGGTACTGTATGGGACATCATTCCAAGAGCAAGGAAAAGAATGTATCAGCATCAACTGGAAGCATTTGAATTCCTCTGGACCAACTTGGCCGGAGGAACAGTCCTTGAGCATTTAGATGAGAAATTAAATTTTGATAGTGGAGGTGGATGCATTATATCACATGCTCCAGGAACAGGGAAAACGTTTCTGACAATTGTCTTTGTTAAGGCATTCATGAGGAAATATCCCAACTGCAGACCAATGATCATAGCCCCAACCTCTATTTTAAACACATGGGAGAGAGAGTTAGAGAAATGGAGTAAAGTAGGTGATCCTGTTCCATTTCACAATCTGAACAACCCTGATCTCTCTGGAAAGGAGACATTTTCTGCCACCAGCCGCATGAGGAGACGTGGTGGTGGTCGCCGTGGACACAGATCTGATATCAGGTGGGCAAAGATTAGCTCATGGAGAGATGCCACTAGCATTCTGGGAATTAGTTACAATCTGTATGATAGGCTTGCTAGGAAGGAATCAAATAGTGTGAAAAAAGCATTGTTTGAACTTCCCGGGATGGTTGTTCTTGATGAGGGACATACACCTAGGAATGACAAGAGTCTCTTGTGGGAGACATTGTCAAATGTGAAGACAAAGAGGAGAGTCATACTTTCTGGGACCCCTTTTCAGAATAACTTCAGGGAGCTTCATAACACCCTCCGCTTGGCCAATCCAGTTGCAACAGCCAAAAAGAATTTGGAATTGTTGCTGAAATCTTATTACAAAGTGGAGAGTGGCGGGGAAAAAGCTGAGATAATCTCTGGGATCAAAGGTGAGATCAAACCATTTGTGCATGTGCATAAAGGTACTGTTCTTCAAGAGAAACTACCTGGATTGAAGGAGGCGGTAGTTACTTTAATGCCGTCTCAAACTCCGATGTTGATGTTTGATTACATCCAGAGGTTAAGGAAGAGCACAGCAGGATCCTCTAACTGGTTTAAGTTTGAGCATTTGATGTCTGTTGCTTCTGTGCATCCTAAACTGTTTATTAAGGAGCTCAAGAAGTTTCCAGAGAGAGAAAGAGTGGCATCAAATGGTCTGCTAGATAAACTAGACTTGTCCCCAGAAGCTGGAATCAAGACCAAGTTTGTGTTAGACTTCATCCAGCAAAGTGAACGTATGAAGGAAAAAGTACTGATTTTTAGTCAGTATATTGATCCATTGGCCTTCCTAGCAAAACAGATCAAATCTCGCTTTCATTGGAGAGAAGGAGAGCAGATGATGATTATTTATGGAAGGACCCAAGAAAGCATACGCCAAGTATCAATGGATGCTTTCAATGATCCAAAAAACAAAGCTAGGGTGATGCTTGCATCAACCAAGACATGTTATGAAGGGATCAATTTGGTTGGTGCTTCAAGGGTCATTTTGCTGGATACATTATGGAATCCTTCTGCAGAAAGGCAGGCTGTGTCTCGATCATATAGGATTGGACAGAGGCGAATTGTGTATACATACCGTCTCATAACTGCAGGGACATGGGATGAAGAGAAGCTTAGCATTCAAGCTGAGAAGGATCAATTGTCTGAATTGGTCTTTTCTGATCCGGCTGAAGCAGGACACCGACAGAATATGTCACCAGATGGTTTTGAAGATAAGCTTTTAGAGAAGATGCCTAATTTTGGGACAACAATTACTGCAAAATCTTTAACATAG 2982 0.4172 MYRGTNVAGRTRSRKETARKLNFENDIESWKQHMVDEIKSEEECCSGNSKFDDDGDDDDDDDVIIVEEATSIRDEENKKESLRGKKLHEKFLEIVAQLKRSPSGSSDGSNHEAEPRGMGIASRTRSYSRVTKCRNTEAGKFRNTKAGTSDNPIDCDDEEEEEEEEEKEANKTDTIVSLESSYFSSDEDESPKVSLKRRRKKSDGLKIRPEKIHGEDEVSLISVPSNVEEGNHKVMGKRRKVSQPSLEESESEEDELDKIWDQMNMADGDPEPEEEDGCEEEEGISEETSEPSLSKPLEESESEEDEADQLFAELNDYLYNEKIRNDQLENGHCDEPHPQGELSIAARCERGDHEPIMMDEEIGIVCKHCRHIIRDIKDCDLEFGKYPTGRPRRRYSYYSEDSEDSLSHDSEVENSGQHDKSSGLITFDSAGTVWDIIPRARKRMYQHQLEAFEFLWTNLAGGTVLEHLDEKLNFDSGGGCIISHAPGTGKTFLTIVFVKAFMRKYPNCRPMIIAPTSILNTWERELEKWSKVGDPVPFHNLNNPDLSGKETFSATSRMRRRGGGRRGHRSDIRWAKISSWRDATSILGISYNLYDRLARKESNSVKKALFELPGMVVLDEGHTPRNDKSLLWETLSNVKTKRRVILSGTPFQNNFRELHNTLRLANPVATAKKNLELLLKSYYKVESGGEKAEIISGIKGEIKPFVHVHKGTVLQEKLPGLKEAVVTLMPSQTPMLMFDYIQRLRKSTAGSSNWFKFEHLMSVASVHPKLFIKELKKFPERERVASNGLLDKLDLSPEAGIKTKFVLDFIQQSERMKEKVLIFSQYIDPLAFLAKQIKSRFHWREGEQMMIIYGRTQESIRQVSMDAFNDPKNKARVMLASTKTCYEGINLVGASRVILLDTLWNPSAERQAVSRSYRIGQRRIVYTYRLITAGTWDEEKLSIQAEKDQLSELVFSDPAEAGHRQNMSPDGFEDKLLEKMPNFGTTITAKSLT 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1633 993 Coils Coil 155 175 - -
Mibi12g1633 993 CDD SF2_C_SNF 802 931 - -
Mibi12g1633 993 Pfam Helicase conserved C-terminal domain 804 920 IPR001650 -
Mibi12g1633 993 MobiDBLite consensus disorder prediction 267 287 - -
Mibi12g1633 993 MobiDBLite consensus disorder prediction 96 306 - -
Mibi12g1633 993 Pfam SNF2-related domain 476 739 IPR000330 GO:0005524|GO:0140658
Mibi12g1633 993 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 808 980 IPR001650 -
Mibi12g1633 993 Gene3D - 421 691 IPR038718 -
Mibi12g1633 993 MobiDBLite consensus disorder prediction 231 247 - -
Mibi12g1633 993 MobiDBLite consensus disorder prediction 153 168 - -
Mibi12g1633 993 Gene3D - 724 991 IPR027417 -
Mibi12g1633 993 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 471 668 IPR014001 -
Mibi12g1633 993 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 667 IPR027417 -
Mibi12g1633 993 SMART ultradead3 440 678 IPR014001 -
Mibi12g1633 993 MobiDBLite consensus disorder prediction 394 423 - -
Mibi12g1633 993 SMART helicmild6 831 920 IPR001650 -
Mibi12g1633 993 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 963 IPR027417 -
Mibi12g1633 993 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 30 980 IPR044567 GO:0080188
Mibi12g1633 993 MobiDBLite consensus disorder prediction 394 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1633 Mibi-ChrMibi12 32213273 32217451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1633 818 957 RAD5 or RAD16-like Gene Family AT5G43530 33.571 7.34e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi12g1633 SNF2_N 3.2e-21 CL0023