Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1608 ATGGAACTTCATCCTAAATACCAAGTTGGCCTTGCTTGCATGCTCATGCTCTTACCTGCATTGTGTTTATCCCAAGGCTTCTCAGATTCCAGAGCCACCTTTTATAGTACCGCCGATGGCTATGGAACTCCAACCGGAGCTTGTGGATATGGAGATTACGGTAGAACTGTGAACTATGGGAGGGTTGCAGGCGTGGCTGGCTTATGGAGAGGTGGCGCTGGATGTGGTGCTTGTTACCAAGTAAGGTGCAAGAACTCAAGATTATGCGATGATTATGGAACGATGGTGGTGGCAACAGATTATGGTGCAGGAGACAGAACAGACTTCATTATGAGTCCCAATGCTTTCTCAAAACTGGGAAAAAACCCAAGTGCATCGGCTGAGTTGAAGAAAAACGGCGTCGTAGACATCGAATACAAGAGAGTACCATGCACATACAATGGTTACAACGTGCGTATCAAGATCCATGAGTCTAGCAGATACCCAGATTACCTTGCTCTTGTCATCCAATACGTTCCTGGAGTGAAGGACGTCACTGCCGTTGAGATTTATGACAATGACCAACATGTATGGAAGCCAATGAGGAGGGTGTATGGGGCAGTGTTTGATATAGTTGGAGCTCCGAGTGGACCATTGAAGCTGAGGCTGCAATTCAGTGGCAGAAAAGGTTGGGTGCAGGCGACCAAGAGTGCAATTCCTGGGGATTGGAAGATTGGTGCTTCTTATGACTCTCAAGTTCATGCCTAA 747 0.4712 MELHPKYQVGLACMLMLLPALCLSQGFSDSRATFYSTADGYGTPTGACGYGDYGRTVNYGRVAGVAGLWRGGAGCGACYQVRCKNSRLCDDYGTMVVATDYGAGDRTDFIMSPNAFSKLGKNPSASAELKKNGVVDIEYKRVPCTYNGYNVRIKIHESSRYPDYLALVIQYVPGVKDVTAVEIYDNDQHVWKPMRRVYGAVFDIVGAPSGPLKLRLQFSGRKGWVQATKSAIPGDWKIGASYDSQVHA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1608 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 244 IPR007117 -
Mibi12g1608 248 Gene3D - 145 245 IPR036749 -
Mibi12g1608 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Mibi12g1608 248 Pfam Lytic transglycolase 62 139 IPR009009 -
Mibi12g1608 248 SUPERFAMILY PHL pollen allergen 150 244 IPR036749 -
Mibi12g1608 248 Pfam Expansin C-terminal domain 151 233 IPR007117 -
Mibi12g1608 248 SUPERFAMILY Barwin-like endoglucanases 14 148 IPR036908 -
Mibi12g1608 248 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Mibi12g1608 248 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Mibi12g1608 248 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Mibi12g1608 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Mibi12g1608 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Mibi12g1608 248 Gene3D - 20 144 IPR036908 -
Mibi12g1608 248 PANTHER EXPANSIN-B3 18 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1608 Mibi-ChrMibi12 31967384 31968827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1608 14 246 Expansin Gene Family AT4G17030 50.000 3.02e-79 237