Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1606 ATGGAGCTTCATTCAAAATACCAAGTGGTCCTTGTTTGTGTGATGCTCTTGCCTGCACTATGCCTCTCCCAATTCACAGACTCTAGAGCCACCTTTTATACAACCCCCGATGGCTATGGGACTTCAACCGGAGCCTGTGGATATGGAGATTACGGCAGAAGTGTGAACAATGGTAGGGTGGCAGACGTGGCTGGCTTATGGAGAGATGGTGCTGGATGCGGTGCTTGCTACCAAGTGAGGTGCAAGAATTCAAGATTGTGCCGTAACTCTGGAACGATGGTGGTAGCAACAGACTATGGTGCAGGAGACAGAACAGACTTCATAATGAGCCCAAATGCTTTCTCAAAACTTGGACGAAACCCAAGTGCATCGGCCGAGCTCGAGAAATATGGCGTCGTAGACGTCGAGTATAGAAGGGTACCATGCACATATGGAGGTTCCAACGTGCGTATCAAGATCCATGACTCCAGCAATTACCCATATTACCTTGCTATTATCATTCTCTATGTCCCTGGAATGAACGACGTCATTGCCGTTGGGATCTATGATAATGGTGTGCATGAGTGGAGGGCAATGAGGAGAGTGTATGGGGCAGTGTTTGATATTGTTGCTGCTCCAAGTGGACCGTTGACTCTGAGGCTGCAATTCAGTGGTACAACTGGTTGGGTTCAGTCCTCCTTCAGTGCCATTCCTAGTTATTGGAAGATTGGAGCTTCCTATGACTCTCAACTTCATCTCTAA 741 0.4791 MELHSKYQVVLVCVMLLPALCLSQFTDSRATFYTTPDGYGTSTGACGYGDYGRSVNNGRVADVAGLWRDGAGCGACYQVRCKNSRLCRNSGTMVVATDYGAGDRTDFIMSPNAFSKLGRNPSASAELEKYGVVDVEYRRVPCTYGGSNVRIKIHDSSNYPYYLAIIILYVPGMNDVIAVGIYDNGVHEWRAMRRVYGAVFDIVAAPSGPLTLRLQFSGTTGWVQSSFSAIPSYWKIGASYDSQLHL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1606 246 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Mibi12g1606 246 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Mibi12g1606 246 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Mibi12g1606 246 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Mibi12g1606 246 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Mibi12g1606 246 Pfam Lytic transglycolase 64 137 IPR009009 -
Mibi12g1606 246 SUPERFAMILY Barwin-like endoglucanases 11 146 IPR036908 -
Mibi12g1606 246 PANTHER EXPANSIN-B3 16 244 - -
Mibi12g1606 246 SUPERFAMILY PHL pollen allergen 148 242 IPR036749 -
Mibi12g1606 246 Gene3D - 19 142 IPR036908 -
Mibi12g1606 246 Gene3D - 143 243 IPR036749 -
Mibi12g1606 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 242 IPR007117 -
Mibi12g1606 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Mibi12g1606 246 Pfam Expansin C-terminal domain 149 231 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1606 Mibi-ChrMibi12 31944419 31945595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1606 4 246 Expansin Gene Family AT4G17030 50.201 4.92e-81 241