Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1605 ATGGAAATTCATTCTTTATACCAAGTAGGGCTTGTGGGTGTGATGTTGCTCTTACCTGTGTTGTGCACCTCACAAGACTTCACATCTTCCAGAGCTACCTATTATGGCAGCCCTGATAGCTATGGAAACCCAAGAGGAGCTTGTGGGTATGGTGATTATGGTAGGACTGTGAATGATGGCAGTGTAGCAGGTGTCTCTGGACTCTGGAACAACGGCTCTGGCTGTGGTGCTTGCTACCAAGTGAGGTGTACAAATGCAGAATACTGCAACGACTACGGATCATTGGTGGTGGCAACAGATTACGGAGAAGGAGACAGAACAGACTTTATAATGAGCCCGCGTGCTTACTCAAGAATGGGACGGAATCCAGAAACATCAGCAGAACTGTTGAAATATGGCATTGTAGATGTGCAGTACACGAGGGTTTCCTGCCCATATGCTGGTGCCAGGACGCTCATCAGAATCCATGAGTCCAGTAGATACCCAGACTACCTTGCTCTCGTCGTTCTCTACGTGCCTGGACAATTAGATGTGGCTTCTATAGAGATATATCAGGTTGATAAAAATGAATGGAGGACGATGAGAAGAGCGTTTGGAGCAGTGTTTGACATACTTGAGGCGCCACGTCAACCAATCATTGTGAGGCTGCAACTCAATGGGAGGACAGGGCTTTATTGGGTACAATCCAAGAGTGCCATTCCCAGTGATTGGAAGATTGGAGCTTCTTATGACACCCAACTTCACATAGAGAATTAA 756 0.4669 MEIHSLYQVGLVGVMLLLPVLCTSQDFTSSRATYYGSPDSYGNPRGACGYGDYGRTVNDGSVAGVSGLWNNGSGCGACYQVRCTNAEYCNDYGSLVVATDYGEGDRTDFIMSPRAYSRMGRNPETSAELLKYGIVDVQYTRVSCPYAGARTLIRIHESSRYPDYLALVVLYVPGQLDVASIEIYQVDKNEWRTMRRAFGAVFDILEAPRQPIIVRLQLNGRTGLYWVQSKSAIPSDWKIGASYDTQLHIEN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1605 251 Pfam Lytic transglycolase 62 139 IPR009009 -
Mibi12g1605 251 Pfam Expansin C-terminal domain 154 234 IPR007117 -
Mibi12g1605 251 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Mibi12g1605 251 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Mibi12g1605 251 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Mibi12g1605 251 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Mibi12g1605 251 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Mibi12g1605 251 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Mibi12g1605 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 245 IPR007117 -
Mibi12g1605 251 PANTHER EXPANSIN-B3 18 247 - -
Mibi12g1605 251 SUPERFAMILY Barwin-like endoglucanases 14 148 IPR036908 -
Mibi12g1605 251 Gene3D - 19 144 IPR036908 -
Mibi12g1605 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Mibi12g1605 251 Gene3D - 147 249 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1605 Mibi-ChrMibi12 31940808 31941837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1605 11 247 Expansin Gene Family AT4G17030 54.622 1.71e-94 276