Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1578 ATGGCGTTGAAAGGGGCTGAACTTAGAGATGTTCAAACATTCACGCCTATATATATATTCCTTTTCCACTCTCTCTTATCTACTCAATTTTCATCACACACAATCCCTAAATCTTCTTCAATTCTCTCATTTCTCTATAATTTCCTCTTCTTCTTCTTCTTCTTCAGAACTTTATCAAACTCTATGATGGCAAATCAAGTTCAGGTTTCAGCCCTTGACCGCATAAAATTGCATCTCCTTGGTGAAATCTCTCCGATGGTAACCGATGCCCTTCGGTTTGAGGAAGCCAACTCATCTATTTCATCTTCCAAATCTCTCTGTTCTCAGTCGTCCATTTCTGACGCTAATTCCATCATGTCTGATTTCTTTCCTGATCTCCTCGACTTTAATCCCGTACCTTCTTCTTCACAAGATCAGACAAATCCGTTTGAATTCGAGTCAAAACCACAAATAATTGACCTAGCAACGCCGAAATCCCAAGTCAAACCCTCGCAATTCGAAACTAGGTTTCCCAAACTCGAACCTAACACACTGGAAAGCCCTGCGTCAAACAGTTGCGTGTTGGATTTCGATCCAAGACCTCAAGAATCACAGAAGAAATCTCACTCAAATAGGAAACCGTCGTTGCAAATCTCGCTGCCGAGGAAAACCGAGTGGATCCAATTCGGAAATCCAGCGCAGCAAGAGGAGGCGGCGACGGCGGAGATCTCAGAGCAGAAAAACACAAAGGAAGTAGAGAAGAAGCATTACAGAGGAGTCCGTCAAAGGCCATGGGGGAAGTATGCGGCGGAGATCAGAGATCCAAACAAGCGTGGATCAAGAGTGTGGCTGGGAACATTTGATACAGCCATAGAAGCAGCTAAAGCATACGATCGAGCTGCCTTTAAGCTTCGAGGATCCAAAGCCATCTTGAACTTTCCTTTGGAGATAGAAACATCGAGGTCCGTGGTTGGCTCCGGCGACGGGAAACGCCGCCGTCAAGAGGAAGAGGAGGTGAAGGCGGTTGTGAAGAAGGTGAAGACGACGACGGAATCGGAATCGACGAAGGACACTCCGTTAACGCCGTCTAATTGGAAGGGGTTTTGGGACAACGATTTAAACGGGATTTTCAGTGTGCCGCCGTTATCGCCACTCCCTCCCTTTGGGTGTCACCAGCTTATGGTTGTATGA 1170 0.4615 MALKGAELRDVQTFTPIYIFLFHSLLSTQFSSHTIPKSSSILSFLYNFLFFFFFFRTLSNSMMANQVQVSALDRIKLHLLGEISPMVTDALRFEEANSSISSSKSLCSQSSISDANSIMSDFFPDLLDFNPVPSSSQDQTNPFEFESKPQIIDLATPKSQVKPSQFETRFPKLEPNTLESPASNSCVLDFDPRPQESQKKSHSNRKPSLQISLPRKTEWIQFGNPAQQEEAATAEISEQKNTKEVEKKHYRGVRQRPWGKYAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEIETSRSVVGSGDGKRRRQEEEEVKAVVKKVKTTTESESTKDTPLTPSNWKGFWDNDLNGIFSVPPLSPLPPFGCHQLMVV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1578 389 CDD AP2 248 307 IPR001471 GO:0003700|GO:0006355
Mibi12g1578 389 ProSiteProfiles AP2/ERF domain profile. 249 307 IPR001471 GO:0003700|GO:0006355
Mibi12g1578 389 Pfam AP2 domain 249 299 IPR001471 GO:0003700|GO:0006355
Mibi12g1578 389 PANTHER DNA-BINDING DOMAIN 203 330 IPR044808 GO:0003700|GO:0009873
Mibi12g1578 389 SUPERFAMILY DNA-binding domain 249 309 IPR016177 GO:0003677
Mibi12g1578 389 MobiDBLite consensus disorder prediction 170 216 - -
Mibi12g1578 389 Gene3D AP2/ERF domain 248 309 IPR036955 GO:0003700|GO:0006355
Mibi12g1578 389 FunFam Ethylene-responsive transcription factor 2 248 309 - -
Mibi12g1578 389 SMART rav1_2 249 313 IPR001471 GO:0003700|GO:0006355
Mibi12g1578 389 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Mibi12g1578 389 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1578 Mibi-ChrMibi12 31654332 31655501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1578 63 389 AP2-EREBP Transcription Factor Family AT5G47230 45.614 2.21e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi12g1578 AP2 6.4e-16 CL0081