Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1573 ATGGTTGAAAAGGAAGATCTGGGTCTCAGTCTAAGCTTGAGCTTCCCTCACAATCCTCCCATTCCTCTCCACCTCAATCTCCTCCCTTCTTCTACTTCTCCTCCTCCTCCTCCTCCTCTTCACAAACCCTCTTGGAATGATGCCTTCACCTCCTCAGATCGAGATTCAGAAACATGCAGAGTAGGCGAAGGCCGATCTTTCCTCCGAGGAATCGACGTGAATCGCTTGCCTTCCGGCGTAGACTGCGAAGACGAGGCCGGTGTTTCTTCTCCCAACAGCACCATCTCCAGCGTCAGTGGCAAGAGAAGCGAGAGAGAACCCAACGGCGAAGATCACGACGCCGACAGAGACTGTTCTCGAGGAATCAGCGACGAAGAAGACGCCGAAACGTCCCGCAAAAAACTCAGACTCTCTAAAGATCAATCCGCTGTCCTCGAAGAAAGCTTCAAAGAACACAACACCCTCAATCCCAAGCAGAAGATGGCACTTGCAAAGCAGTTAGGCCTTCGACCAAGACAAGTGGAGGTCTGGTTTCAGAACAGAAGAGCAAGGACGAAGCTGAAGCAAACAGAGGTAGACTGTGAGTTCTTGAAGAGATGCTGTGAGAATCTGACGGATGAGAACAGGAGGTTGCAGAAAGAAGTTCAAGAGCTAAGAGCACTGAAACTTTCCCCACAACTCTACATGCAAATGACCCCACCCACTACCCTCACCATGTGCCCCTCGTGTGAGAGGGTCGCCGTGCCGCCTTACGCCGGCGGCGGCAACCGCCACCACCACCCGATGGCCCAGGCCCACGCTCGGCCCGTCCCTGTCGGCCCATGGGCCGCCACAGCAGCTCCCATGGCCCACCGGCCCTTTGATGTTCTTCACCGCAGATCGTGA 885 0.5469 MVEKEDLGLSLSLSFPHNPPIPLHLNLLPSSTSPPPPPPLHKPSWNDAFTSSDRDSETCRVGEGRSFLRGIDVNRLPSGVDCEDEAGVSSPNSTISSVSGKRSEREPNGEDHDADRDCSRGISDEEDAETSRKKLRLSKDQSAVLEESFKEHNTLNPKQKMALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCERVAVPPYAGGGNRHHHPMAQAHARPVPVGPWAATAAPMAHRPFDVLHRRS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1573 294 SUPERFAMILY Homeodomain-like 122 189 IPR009057 -
Mibi12g1573 294 Gene3D - 136 186 - -
Mibi12g1573 294 Coils Coil 187 224 - -
Mibi12g1573 294 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Mibi12g1573 294 MobiDBLite consensus disorder prediction 1 64 - -
Mibi12g1573 294 MobiDBLite consensus disorder prediction 81 139 - -
Mibi12g1573 294 MobiDBLite consensus disorder prediction 87 102 - -
Mibi12g1573 294 FunFam Homeobox-leucine zipper protein 18 116 193 - -
Mibi12g1573 294 CDD homeodomain 132 189 IPR001356 GO:0003677
Mibi12g1573 294 MobiDBLite consensus disorder prediction 29 43 - -
Mibi12g1573 294 Pfam Homeodomain 132 186 IPR001356 GO:0003677
Mibi12g1573 294 PRINTS Lambda-repressor HTH signature 168 184 IPR000047 GO:0003677
Mibi12g1573 294 PRINTS Lambda-repressor HTH signature 159 168 IPR000047 GO:0003677
Mibi12g1573 294 Pfam Homeobox associated leucine zipper 188 222 IPR003106 GO:0006355|GO:0043565
Mibi12g1573 294 SMART halz 188 231 IPR003106 GO:0006355|GO:0043565
Mibi12g1573 294 MobiDBLite consensus disorder prediction 103 139 - -
Mibi12g1573 294 SMART HOX_1 130 192 IPR001356 GO:0003677
Mibi12g1573 294 Pfam HD-ZIP protein N terminus 1 106 IPR006712 GO:0005634
Mibi12g1573 294 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Mibi12g1573 294 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 24 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1573 Mibi-ChrMibi12 31574765 31576157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1573 1 294 Homeobox Transcription Factor Family AT5G47370 60.065 1.38e-109 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mibi12g1573 HD-ZIP_N 4.9e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1573 12 31574765 31576157 Mibi10g0412 10 6650957 6652496 CCT