Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1550 ATGGAGAGGCACAAATGCAAGCTCTGCTCTCGAAGTTTCTCCAATGGCAGAGCATTAGGTGGTCACATGAAGGCTCACTTGACCTCTCTTCCTCTCCCTCCCAAGCCCCAACCTCTCCTCACTCCTTCTCTCTCTTATTCCTCCTCCGACGACGACGACGACGGAGAACAACAACAACAACAATCACAATTCGCGCCTGTTTACAGAGATTCCGACGAGAAAGCTCTAAATTACGTCCTCAGGGAGAATCCGAGGAAGAATTTCAGGTTTTCAGATCCTGAGTTCTCTTTTGCTGCTGCTGTTGTTGTTCAAGATAGAGAGAGCGAGACCGAGACCGAGTCAAAGAATCCGACTCGCCGGCGATCCAAGCGAGTCAGGAAATCCAGCGTTCAGAAATTCGAAGTGGCCAAGGCGAAGTCGAATTTGACTGAGTCGCCGGAGCCGGTGAGCTCGGTTTCTGATACTTCGCCGGACGAAGATGTTGCTATGTGCCTCATGATGCTTTCCAGGGACAGATGGTTGAGGAACGAAGAAGAAGATCAAGTGGTGGAGAGATCCAAGAAGAACAAGAAGAAGAAGCATCAATCTGATATCACTAATAATAATAGGGCCTATTTTCCTGAAGAAGAAGCAGAGACTAACAAAATTTCAGGTAACGATAAAATTTTCGAATGCCCATTCTGTTACAAAGTTTTTGGTTCGGGACAAGCACTCGGTGGTCACAAGAGATCTCACCTTCTGCCATCTTCTTCGTCCTCTACTGCTATTCACTCTGCTAAATGTTCCATGATAGATCTCAATCTGCCAGCTCAGGCTGAAGAAGATGAGCTAAGCGTGGTTTCTGATGCCTAG 852 0.473 MERHKCKLCSRSFSNGRALGGHMKAHLTSLPLPPKPQPLLTPSLSYSSSDDDDDGEQQQQQSQFAPVYRDSDEKALNYVLRENPRKNFRFSDPEFSFAAAVVVQDRESETETESKNPTRRRSKRVRKSSVQKFEVAKAKSNLTESPEPVSSVSDTSPDEDVAMCLMMLSRDRWLRNEEEDQVVERSKKNKKKKHQSDITNNNRAYFPEEEAETNKISGNDKIFECPFCYKVFGSGQALGGHKRSHLLPSSSSSTAIHSAKCSMIDLNLPAQAEEDELSVVSDA 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1550 283 ProSitePatterns Zinc finger C2H2 type domain signature. 225 245 IPR013087 -
Mibi12g1550 283 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Mibi12g1550 283 SMART c2h2final6 4 26 IPR013087 -
Mibi12g1550 283 SMART c2h2final6 223 245 IPR013087 -
Mibi12g1550 283 MobiDBLite consensus disorder prediction 134 157 - -
Mibi12g1550 283 MobiDBLite consensus disorder prediction 177 203 - -
Mibi12g1550 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 245 IPR013087 -
Mibi12g1550 283 MobiDBLite consensus disorder prediction 103 157 - -
Mibi12g1550 283 Pfam C2H2-type zinc finger 3 27 - -
Mibi12g1550 283 Pfam C2H2-type zinc finger 223 245 - -
Mibi12g1550 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Mibi12g1550 283 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 208 283 IPR044303 GO:0006355
Mibi12g1550 283 MobiDBLite consensus disorder prediction 26 69 - -
Mibi12g1550 283 SUPERFAMILY beta-beta-alpha zinc fingers 3 245 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1550 Mibi-ChrMibi12 31341677 31342528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1550 1 280 C2H2 Transcription Factor Family AT3G60580 34.451 2.49e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi12g1550 zf-C2H2_6 1.2e-07 CL0361