Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1455 ATGGTGAGAGGTAAAACTGAGATGAAACGCATAGAGAATGACACGAGCAGGCAAGTGACGTTCTCGAAGAGAAGGAATGGGCTGCTTAAGAAGGCTTTTGAGCTCTCTGTGCTATGCGATGCTGAAGTTGCACTCATCATCTTCTCCGCCGGAGGCAGGCTTTCTGAGTTCTCCAACACTAGTGTGAATAAAACGGTTGAACGCTATCTAAGGAAAGTCAAGGACCGGGGTCTTGGCACCAAAGGAAGCCATGCAACTACGCAGGAAGGTACCATTAACATGACTAAGAAGATAGAGCAACTTGAAGTTCTCAGAAGGAAGCTTCTGGGAGATGGTTTGGATGCGTGTTCTATTGACGAGCTACGTCAGATAGAGAACCAGCTTGAACACAGTTTAACGAAAATTAGGGCAAGGAAGAATCAGTTATTCAAGGGACAGATCGAGGAGTTAAGAGTAGAGGAAAAGCGCCTGCTGGAAATAAATAAAGATTTACTGGAGCAGTGGTCACAGCGTGGCGGCTGCGGCGATGAACCGAGAAATTCGTCCGATGAAGAGCAGGACGATGAGCACTTGAGTGAGGGAATGGATGGTGTGGATGTGGAGACAGAGTTGGTTATAGGACCACCAGCAGAGAGACGAGTGCCTTGA 648 0.4769 MVRGKTEMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSAGGRLSEFSNTSVNKTVERYLRKVKDRGLGTKGSHATTQEGTINMTKKIEQLEVLRRKLLGDGLDACSIDELRQIENQLEHSLTKIRARKNQLFKGQIEELRVEEKRLLEINKDLLEQWSQRGGCGDEPRNSSDEEQDDEHLSEGMDGVDVETELVIGPPAERRVP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1455 215 MobiDBLite consensus disorder prediction 169 215 - -
Mibi12g1455 215 Coils Coil 147 167 - -
Mibi12g1455 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi12g1455 215 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Mibi12g1455 215 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Mibi12g1455 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi12g1455 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi12g1455 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi12g1455 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi12g1455 215 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi12g1455 215 Coils Coil 118 141 - -
Mibi12g1455 215 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Mibi12g1455 215 Pfam K-box region 86 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi12g1455 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi12g1455 215 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Mibi12g1455 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi12g1455 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1455 Mibi-ChrMibi12 30205109 30210362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1455 1 213 MADS-box Gene Family AT4G22950 56.744 3.63e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi12g1455 K-box 2.6e-22 No_clan