Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1453 ATGCAATCAGAGGGAATGATGGGTGGTTTTGAGGGAGATTTAGGTGGCGGAGGAGGCGACCATCTCCGGCAGCTGAAGGCGGAGATAGCCACACACCCTCTCTATGACCAGCTTCTGGCAGCACACGTGTCATGCCTACGTGTGGCCACGCCCATAGATCAGCTGCCACTCATCGACGCTCAGCTATCGCAGTCACACCATATCCTCCGATCCTATGCCTCCCACCACACCCATTCTCTTTCCCTCCCTGACCGTCACGACCTCGACCACTTCCTGGCACAATATTTGTTAGTGTTGTGTAGTTTCAAAGAACAGCTTCAACAACATGTCAAAGTCCACGCCGTCGAAGCCGTCATGGCCTGCCGTGATATTGAAAATACCCTACAAGCTCTCACTGGTGTTAGTTTGGGAGAGGGAAGTGGGGCAACAATGTCAGATGATGAGGAAGATATGCCAATGGATTTCTCATTAGATCAATCTGGCGCTGAAGGTCACGACATGATGGGATTTGGTCCTTTGCTTCCTACCGAATCTGAAAGGTCACTCATGGAAAGAGTTCGTCAGGAACTCAAGATTGAGCTCAAGCAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTAAGGAAAAGAAGAGCAGGGAAGTTACCTGGAGACACGACCTCAGTGTTGAAGAACTGGTGGCAGCAACATTCAAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTAGTGGAGGAGACAGGGCTACAGCTGAAGCAGATCAATAATTGGTTCATAAACCAAAGGAAACGCAATTGGCACAGCAACTCTCAATCAGTCACCTCTTTGAAGTCCAAGCGCAAGAGATAG 861 0.4901 MQSEGMMGGFEGDLGGGGGDHLRQLKAEIATHPLYDQLLAAHVSCLRVATPIDQLPLIDAQLSQSHHILRSYASHHTHSLSLPDRHDLDHFLAQYLLVLCSFKEQLQQHVKVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEEDMPMDFSLDQSGAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1453 286 Pfam Homeobox KN domain 229 268 IPR008422 GO:0003677|GO:0006355
Mibi12g1453 286 CDD homeodomain 212 273 IPR001356 GO:0003677
Mibi12g1453 286 Pfam KNOX1 domain 25 66 IPR005540 GO:0003677|GO:0005634
Mibi12g1453 286 FunFam homeobox protein knotted-1-like 3 isoform X1 210 271 - -
Mibi12g1453 286 Pfam KNOX2 domain 84 132 IPR005541 GO:0003677|GO:0005634
Mibi12g1453 286 SUPERFAMILY Homeodomain-like 211 276 IPR009057 -
Mibi12g1453 286 SMART KNOX1_2 23 67 IPR005540 GO:0003677|GO:0005634
Mibi12g1453 286 ProSiteProfiles ELK domain profile. 189 209 IPR005539 GO:0003677
Mibi12g1453 286 Gene3D - 208 282 - -
Mibi12g1453 286 SMART HOX_1 211 276 IPR001356 GO:0003677
Mibi12g1453 286 ProSiteProfiles 'Homeobox' domain profile. 209 272 IPR001356 GO:0003677
Mibi12g1453 286 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 273 - -
Mibi12g1453 286 SMART KNOX2_2 78 133 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1453 Mibi-ChrMibi12 30162361 30165973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1453 5 285 Homeobox Transcription Factor Family AT1G62990 78.694 5.12e-169 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mibi12g1453 KNOX2 2.2e-16 No_clan