Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1429 ATGGCGTCAACTAGGTCACCAAATCCTTCCTCCGAAGACAACTTACTCGATTCGACTCCGTTCATATCAAATCCAGGTGGGCCCTCCGATGAATTCAATCCCAGCCGTCGATTCCTCCGCCGCCAGAGCCTCCGTCAAGCGGCTCGATTCCTAAGGCAAGCAAGTGGCCGAAGAATGATGCGAGAGCCATCGATGATGGTAAGAGAGACAGCAGCTGAGCAATTAGAAGAAAGACAAGGAGATTGGGCTTATTCTAAACCTGTTGTGATCCTTGATATTATCTGGAACTTCGTCTTTGTTGTTGTGGCTGTTACAATTTTGATTATGAGTCGAAGTGAGTCGCCGAGTGTGCCTTTGAGGTTGTGGATTGTTGGCTATGCTCTTCAATGTAGCCTTCATGTGTTCTGCGTTTGCGTTGAGTATAGACGGCGGCGGCGGCTCCGGCGGCGTCAGTATTCGCCGTCTTCAGACGCTGTGAATGGAAGTGTAGGTAGTGGTGGGAATCTGAGTTCGAGTTCTAGGGATGGTTCTGGCCACTATGTGGCATTGGCGCAATTTAATGAACAGGAGGGTTCAAGTGTAGCAAAGCATTTGGAGTCTGCAAACACAATGTTTTCTTTTATCTGGTGGATCATTGGATTTTACTGGGTATCAGCTGGTGGTCAATCTCTAGTCCATGATTCTCCATTTTTATACTGGTTATGTATAGCTTTCCTGGGATTTGATGTTTTCTTTGTGGTATTCTGTGTTGCACTGGCATTCATCATTGGTATTGCGGTATGCTGTTGCCTTCCATGTATTATTGCACTTCTATATGCAGTTGCGGACCAGGAAGGGGCATCAAAAGAAGACATCGAGCAGTTGTCTAAGTTTAAATTCAGAAGAATTGACAATAATGAGAAACTTGCTGGTAGTGCACAAGAACCAGTTGGCGGAATAATGACTGAATGCGGCACTGATTCACCGAGTGAACACTTTCTTTCTGAGGAGGATGCGGAATGCTGCATCTGTCTATCTTCTTATGATGATGGTGTTGACCTTAGAGAACTTCCTTGTGGCCACCATTTTCACTGTGCCTGTGTGGACAAGTGGCTGTACATTAATGCTACTTGTCCTCTCTGCAAGTACAACATCTTGAAGAGAATAGACCAAGAGGAAGCGTAG 1164 0.4588 MASTRSPNPSSEDNLLDSTPFISNPGGPSDEFNPSRRFLRRQSLRQAARFLRQASGRRMMREPSMMVRETAAEQLEERQGDWAYSKPVVILDIIWNFVFVVVAVTILIMSRSESPSVPLRLWIVGYALQCSLHVFCVCVEYRRRRRLRRRQYSPSSDAVNGSVGSGGNLSSSSRDGSGHYVALAQFNEQEGSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLVHDSPFLYWLCIAFLGFDVFFVVFCVALAFIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIDNNEKLAGSAQEPVGGIMTECGTDSPSEHFLSEEDAECCICLSSYDDGVDLRELPCGHHFHCACVDKWLYINATCPLCKYNILKRIDQEEA 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1429 387 MobiDBLite consensus disorder prediction 1 30 - -
Mibi12g1429 387 Pfam Ring finger domain 333 375 IPR001841 -
Mibi12g1429 387 ProSiteProfiles Zinc finger RING-type profile. 334 375 IPR001841 -
Mibi12g1429 387 FunFam E3 ubiquitin-protein ligase At1g12760 320 385 - -
Mibi12g1429 387 MobiDBLite consensus disorder prediction 1 34 - -
Mibi12g1429 387 PANTHER TARGET OF ERK KINASE MPK-1 54 379 - -
Mibi12g1429 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 384 IPR013083 -
Mibi12g1429 387 MobiDBLite consensus disorder prediction 152 176 - -
Mibi12g1429 387 CDD RING-H2_RNF111_like 333 377 - -
Mibi12g1429 387 SMART ring_2 334 374 IPR001841 -
Mibi12g1429 387 MobiDBLite consensus disorder prediction 153 176 - -
Mibi12g1429 387 SUPERFAMILY RING/U-box 326 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1429 Mibi-ChrMibi12 29860408 29863713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1429 22 385 C3H Transcription Factor Family AT1G68070 47.838 8.71e-116 339