Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1427 ATGGCGCCATTGCCGGTGGAGCAGACCGGTGAATCAGCGCCGTCCGATTCGCAGAGATCTATTCCCACGCCCTTCCTCACCAAAACCTACCAGCTTGTCGATGACCCCTCCGTCGACGACCTTATTTCCTGGAACGATGATGGAACCACTTTCATAGTTTGGCGTCCCGCTGAATTCGCTCGCGATTTGCTCCCCAAGTATTTCAAGCACAATAACTTCTCCAGTTTCGTCCGTCAGTTAAATACCTATGGATTTCGGAAGGTTGTCCCCGATCGTTGGGAATTCGCTAATGACTGTTTCCGGCGAGGCGAGAGGAGCCTGCTTCGGGACATTCAACGCCGGAAATTGTCGGTGGCTACGGCGAATGCGGTGACGGTGGCCGCGGCGGCGATAGGGGTGTCTCCGACGAACTCCGGTGAGGAACAGGTAATATCTTCGAACACATCTCCGGTTGGGGGTAATAATACAGTGCAGCGCACGACAAGTTGCACCACTGCACCAGAGCTAATAGAAGAGAATAGGAAGCTTAGGAAAGAGAACATGCAATTGAGTAATGAATTGAGTCAATTGAAGGGGCTATGTAATAACATACTGACATTGATGACCAATTATGCTTCAACCCAATTAGAGTCCAGTAGTGCTGCTGAAGGAAAGTCATTGGATCTTTTACCTGCGACTCAGCATTCTGCTGAGGAAGCCATGGTTGAAGAAGGTGGGGCTTCACAGGATATGAAATTTGCAGAGGAGGTGGTGCCTAAATTGTTTGGGGTTTCAATTGGGGCGAAACGACTTCGGAGTTCAGAGGGTGAGGAGGCAGAAAAAGAAGAACAGAATCAAACACAGTCGTCCCAAGAACACGATGGTGGCTCAGATGTAAAAACAGAGCCCCTAGATTGTAGTAACTCCGATGATCAGGAGACGCCATGGCTGTAG 933 0.4995 MAPLPVEQTGESAPSDSQRSIPTPFLTKTYQLVDDPSVDDLISWNDDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERSLLRDIQRRKLSVATANAVTVAAAAIGVSPTNSGEEQVISSNTSPVGGNNTVQRTTSCTTAPELIEENRKLRKENMQLSNELSQLKGLCNNILTLMTNYASTQLESSSAAEGKSLDLLPATQHSAEEAMVEEGGASQDMKFAEEVVPKLFGVSIGAKRLRSSEGEEAEKEEQNQTQSSQEHDGGSDVKTEPLDCSNSDDQETPWL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1427 310 Gene3D - 17 115 IPR036388 -
Mibi12g1427 310 FunFam Heat stress transcription factor B-4 17 115 - -
Mibi12g1427 310 Coils Coil 166 193 - -
Mibi12g1427 310 MobiDBLite consensus disorder prediction 137 159 - -
Mibi12g1427 310 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1427 310 MobiDBLite consensus disorder prediction 1 22 - -
Mibi12g1427 310 MobiDBLite consensus disorder prediction 261 310 - -
Mibi12g1427 310 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1427 310 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1427 310 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1427 310 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 282 IPR027725 -
Mibi12g1427 310 MobiDBLite consensus disorder prediction 264 281 - -
Mibi12g1427 310 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1427 310 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Mibi12g1427 310 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1427 Mibi-ChrMibi12 29849089 29850438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1427 16 310 HSF AT4G11660 55.728 9.09e-111 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mibi12g1427 HSF_DNA-bind 1.6e-32 CL0123