Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1418 ATGTCCTCCTCAATCGTAGCAGAACGATCAAGAGCATTATCAAAAACTCTCTGCAACTTCATCCTTATCCGAAGCATGGGTGGGGGTCCTCGCACATTCCCCGGCGGCGTCAACAAGTGGAAATGGAAGCGAATGCACGAGAAGCGAGCCAGAGACAAAGAAAGAAGACTTCTCGATCAAGAAAAACAGCTCTACCAGGCTCGTATTCGCTCCCACATCCGATCCAAACTCACCGCAAAACCAGACGCCTCAACCGCCACTCACAGCCCCATGGCCCCACAAGATCATATCAAAGCCTTAGCCGATCGATTCATGAAGGAAGGAGCTGAAGATCTATGGAACAGAAATGACGGCCCGTTAAAGCCTCCGCCTTTAAATAGACTGCGAGGATTAACGGCGTCACCGGTGGACACGAGGAAGCTGATACCGAAAGGTCGTGACTTTTTCGTTGGTAGTCAAAATTTCAATTTGATGAATACGAGGAGTGATTTCACTCAGAGGAGGGATTACTCAACGCAAAGTCGGAGGAGGTTTCAAAGGAATGAGAGTTCATCGGAGGAGGAAGATTCTGGTTTTGGGTTAGAGAGGAATTCTGTGAGACCCATTGTCAGAAATTCGTTTAGTGGTCAGAAGATCATGGTTGATGCAAATGCGGGTGAGTATATGAAGAAGAAGGCGAATGTCCCGAGAAGGCAACGGAAGATATGGAGAGATGACAGTTCTTCCAGTGAGAGTGAATCGGACATTGTTTCGGATGGTTTAAGGATAGTTAGGGGCGTAAATAAGATGGGTAGTAGTGCTTCTTTGGGAAAGTATGATGTAAAGACGAAGAGGAGGGTGCCCCCGCAGTCTTATGACGAGGAGAGTGACCTTTTTGAACAGGTTGAATTGATCAGGTATGAGCTGAATAAGAGGAAGATGACCGATAATGAGCAGCAGAAAAGTGAGGAGGATACGTTACTTAGTCAGAAAAGATTTGATGAGTGTGGCATATCGCCCCTGACAATAAAGGCACTTTCTTCAGCTGGTTATATTCGCATGACACGAGTTCAAGAGGCTAGCCTTTCTGTTTGCCTTGAGGGCAAGGATGCTTTGGTCAAAGCTAAAACTGGCACTGGGAAAAGTGCAGCATTTTTGCTTCCTGCTATTGAAACAGTTCTTAAAGCAATGAGTGAAAATGCCCCTCAACGCGTGCCTCCAATACTTGTTCTGATCCTCTGCCCTACCAGAGAGCTTGCAATTCAAATTACCGCAGAATTAAAAGTTTTACTCAAGTACCATGATGGAATTGGAGTCCAGACGCTAATAGGAGGAATTCGATTTAAAGACGACCAAAAACGTCTTGAATCAGATCCATCGCAGATTATTGTTGCTACTCCAGGCAGGTTGCTAGATCATATCGAGTATAAGTCTGGAATATCTCTGCGGTTGATGGGTTTGCAGATGCTCATACTTGATGAAGCCGATCATTTATTGGACTTGGGCTTTCGAAAGAGTGTAGAAAAGCTTGTTGATTGTTTGCCCCGTCAAAGGCAATCCTTGCTATTTTCTGCAACCATTCCAAAGGAGGTCCGGCGTATATCTCAACTTGTTTTGAAAAGGGATCATACATATATTGACACAGTGGGGATGAATTGTGTGGAAACTCCTGTTAAAGTAAAGCAATCTTATCTTGTCGCTCCTCATGAATTTCATTTTCAAATATTGCACCATATTTTGAAGGAGCACATCTTGCAAGCACCTGATTATAAGGTTATTGTTTTCTGTGTAACTGGGATGGTGACTTCACTCTTGTATCAACTTCTTCGGGAAATGAAAATGAATGTTAGGGAGATACATTCCCGAAAACCTCAACTTTATCGAACTCGCATTTCGGATGAGTTTAGGGAATCTAAACAACTGATTCTTATCTCGTCTGATGTTTCATCTCGTGGAATGAATTACCCTGATGTTAGCTTAGTCATCCAGGTGGGTATTCCTACTGACCGAGAACAATATATCCATCGTGTTGGAAGAACAGGACGAGAAGGCAAAGAAGGGGAATGCATATTGTTAATTGCTCCATGGGAAGAGTACTTTTTAGATGAGATCAAAGATCTTCCCCTCACGAGATTCCCTTTACCAGATATAGATCCTGAGATAAAGCTAAAGGTTGGTAATTCAATGGCAAAGATTGATAATGATGTCAAAGAATCAGCTTATCACACATGGCTTGGTTATTATAATTCAATAAGGGAAATCGGGAGGGACAAGACCACTCTAGCTGAGCTAGCGAACCAATTTTCAGAATCAATTGGTTTGCAGAGGCCTCCTGCTCTCTTCAGGAAGACTGCACTAAAAATGGGATTGAAAGACATTCCTGGCATCAGAATACGTAGATAG 2382 0.4349 MSSSIVAERSRALSKTLCNFILIRSMGGGPRTFPGGVNKWKWKRMHEKRARDKERRLLDQEKQLYQARIRSHIRSKLTAKPDASTATHSPMAPQDHIKALADRFMKEGAEDLWNRNDGPLKPPPLNRLRGLTASPVDTRKLIPKGRDFFVGSQNFNLMNTRSDFTQRRDYSTQSRRRFQRNESSSEEEDSGFGLERNSVRPIVRNSFSGQKIMVDANAGEYMKKKANVPRRQRKIWRDDSSSSESESDIVSDGLRIVRGVNKMGSSASLGKYDVKTKRRVPPQSYDEESDLFEQVELIRYELNKRKMTDNEQQKSEEDTLLSQKRFDECGISPLTIKALSSAGYIRMTRVQEASLSVCLEGKDALVKAKTGTGKSAAFLLPAIETVLKAMSENAPQRVPPILVLILCPTRELAIQITAELKVLLKYHDGIGVQTLIGGIRFKDDQKRLESDPSQIIVATPGRLLDHIEYKSGISLRLMGLQMLILDEADHLLDLGFRKSVEKLVDCLPRQRQSLLFSATIPKEVRRISQLVLKRDHTYIDTVGMNCVETPVKVKQSYLVAPHEFHFQILHHILKEHILQAPDYKVIVFCVTGMVTSLLYQLLREMKMNVREIHSRKPQLYRTRISDEFRESKQLILISSDVSSRGMNYPDVSLVIQVGIPTDREQYIHRVGRTGREGKEGECILLIAPWEEYFLDEIKDLPLTRFPLPDIDPEIKLKVGNSMAKIDNDVKESAYHTWLGYYNSIREIGRDKTTLAELANQFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1418 793 MobiDBLite consensus disorder prediction 160 193 - -
Mibi12g1418 793 Pfam Helicase conserved C-terminal domain 571 676 IPR001650 -
Mibi12g1418 793 SMART ultradead3 343 554 IPR014001 -
Mibi12g1418 793 CDD SF2_C_DEAD 553 686 - -
Mibi12g1418 793 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 324 352 IPR014014 GO:0003724
Mibi12g1418 793 MobiDBLite consensus disorder prediction 226 248 - -
Mibi12g1418 793 Gene3D - 548 773 IPR027417 -
Mibi12g1418 793 Coils Coil 43 63 - -
Mibi12g1418 793 SMART helicmild6 596 677 IPR001650 -
Mibi12g1418 793 PANTHER RNA HELICASE 285 722 - -
Mibi12g1418 793 Gene3D - 301 540 IPR027417 -
Mibi12g1418 793 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 572 722 IPR001650 -
Mibi12g1418 793 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 355 538 IPR014001 -
Mibi12g1418 793 MobiDBLite consensus disorder prediction 168 193 - -
Mibi12g1418 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 694 IPR027417 -
Mibi12g1418 793 Pfam DEAD/DEAH box helicase 348 526 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1418 Mibi-ChrMibi12 29812137 29816953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1418 326 702 Eukaryotic Initiation Factors Gene Family AT3G19760 29.367 8.36e-46 167