Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1408 ATGGCGTCCAAGCTCTTGGCACTGAGTTGCATGGGCAGTGAAGGACGTGTCCGGCCATGGACACGGCCTCATTATCCGTCGATGCCGACGTACCCGAAGGCGGAGGAGGGAAGCAGCACCACCGTGGAGGGGTCAGAAGTGAAGGCCCTTTTCTCAGTCATCGGAATGACATGTTCTGCTTGCGCCGCCTCCGTCGAGAAAGGGATCAAACGCCTCCCCGGAATCCGGGAGGCCGTCGTCGATGTCCTCAATAATCGAGCTTTGGTTCTCTTCTACCCCTCCTTTGTTAACTGCACATATCACATGCACCCACCCATTACACCCAATAATTTCTCAAATTTTGGCTATAAAGTTAATGGCGACTTGCAAACCCATTTTCGCACCAAAAAATTTTTCAAAAAAAAAAAAAAGGAGTTTCTGGGGTTACATCGAAAAGGTTCCATGGCGTCAAAGCTCCTAGCTTTGGCCTGCATTCGGAGCAATGGATGGGACAGGCTTTTGACACGGCCTCATTACCCGTCGATGCCGACCTACCCAAAGGGCGTGGCGGCGAAAGGTTCAGAAGCCAAAGCCCTTTTCTCCGTCCTCGGAATGTCTTGCTCTGCTTGCGCAGGTTCCGTCGAGAAAGCCATTAAACGCCTACCTGGGATTCGTGAGGCAATCGTCGATGTTCTTAATAATCGAGCTTTCGTTATCTTCTACCCTTCCTTCGTTAACGAGGAGACTATTCGTGAGGCCATTGAAGACACTGGATTTGAAGCTACATTGCTAAGAGATGAGATGAATGATAGATCAGTTCAAGTATGTCGCATAACCGTAACTGGAATGACTTGCACTTCTTGCTCCTCCACTGTGGAATCAGCTTTGCAAGCAATTCCGGGTGTTCTGAAAGCTCAAGTGGCTTTGGCGACTTATGAAGCGGAAGTACATTACAATCCAAACATTGTCAACTACAATCAAATTCTGGAAGCCATAGAAGACACTGGATTTGAAGCCACACTTATCAGTTCAGGTGAAGACATAAGCAAAGTAGAGCTCCAAGTTGATGGTGTACGAACTGAACATTCCATGAGAATCGTTGAAACTTCTCTTCAAGCTCTCCCTGGGGTCCAGGATATAGAATTATATCCTGACCTGAAGAAAATATCAGTTTCATTCAAACCTGACGTAACAGGACCTAGGAATTTCATCAATGTTACTGAAAAAATTGGGTCCGGACGTTTCAAGGCTAAATTATTCTCTCAGCAAGGAGAACGAAGAGATACTCATGGACGGAAGGAAATTAAACAATATTATAGATCCTTCTTATGGAGTTTGGTTTTTACTATTCCAGTCTTTTTAACCTCTATGATTCTTATGTATATCCCTGGAATTAAGCATGGACTAGATACCAAAGTTGTCAATATGCTTACAGTGGGACAGCTTTTAAGATGGGTGCTTTCCACGCCAGTACAGTTCATAATTGGCCGGAGATTTTACATTGGATCTTACAAATCCTTACGCCATGGTTCTGCCAACATGGACGTCTTGATTGCCTTAGGAACAAATGCAGCATACTTCTACTCAGTTTACTCGGTACTGAGAGCTGCCAGCTCCCCACATTTCGAGGGGACTGATTTCTTTGAGACCAGCGCAATGCTTATTTCATTCATTCTGCTGGGAAAGTATCTGGAAGTCCTCGCCAAGGGGAAGACATCTAATGCTATCGCCAAGCTCATGAACTTGACCCCTGACACAGCTATATTGTTGACCCTGGATGATGAAGGGAATGTTGCTGATGAAGAAGAGATTGACAGTCGTTTGATTCAAAAGAATGATCTGATTAAAATTATCCCTGGTGCAAAAGTAGCTTCTGATGGATATGTCGTCTGGGGCCAGAGCCACGTGAATGAGAGCATGATAACCGGGGAGGCACGTCCTGTCGCGAAGAGGAAGGGCGATCCTGTTATTGGGGGAACTGTGAATGAGAATGGAGTGTTACATGTCAGGGCAACAAGAGTTGGATCAGAGAGTGCTCTTTCACAGATTGTTCGATTAGTTGAGTCAGCACAGTTGGCCAAAGCTCCTGTGCAGAAGTTTGCTGATCGCATTTCGAAATTCTTTGTGCCTTTGGTCATTTTAATCTCTGTCACCACATTTCTTGCATGGTTCTTAGCTGGAAGGATCAATGCGTACCCGAAATCTTGGATACCATCTTCCATGGATAGTTTTGAGCTTGCATTACAGTTTGGCATCTCTGTCATGGTCATAGCTTGCCCTTGTGCTCTAGGTCTAGCCACACCAACTGCTGTTATGGTTGGCACAGGAGTTGGTGCATCTCAAGGTGTACTAATCAAAGGAGGGCAAGCATTAGAAAGTACACATAAGGTGCAATGCATTGTCTTTGATAAGACTGGTACTCTCACTGTTGGGAAGCCTGTGGTTGTAAACACCAGATTATTGATTAATATGGTACTCCAGGAGTTCTATGAACTTGTAGCAGGAGCCGAGGTGAACAGCGAGCATCCATTGGCCAAGGCCATTGTTGAGTATGCCAAGAAATTTAAAGATGAAGAGAATCCTGCTTGGCCTGAAACACGAGATTTTGTCTCCATACCTGGCCATGGGGTGAAGGCCATTGTTCGAAACAAGGAAATAATTGTGGGTAACAAGAGCTTGTTGGCTGACCATAATATTGCAGTTCCTGTGGAGGCAGAAGATATGCTGGCTGAGGCTGAGGAAATGGCTCAAACTGGAATTTTGGTATCGATTAATGGGGAAGTGGCTGGAGTTGTAGCAGTATCTGATCCATTGAAACCGGGTGCTCAAGAAGTGATCTCAATTCTCAAGTCCATGAACATCAAAAGCATTGTAGTAACCGGTGACAATAGGGGAACTGCTAATTCTATAGCAAGGGAAGTTGGGATTGATGAAGTCTTTGCTGAGACTAAACCAGAGCAGAAAGCAGAGAAAGTGAAGGAGTTGCAGGCTGCTGGATATACAGTGGCAATGGTTGGGGATGGTATCAATGATTCACCAGCACTGGTAGCAGCAAATGTGGGAATGGCAATTGGTGCTGGCACAGACATAGCTATTGAGGCTGCTGACATTGTTCTGATGAAGAGCAACTTGGAGGATGTGATTACTGCCATTGATCTTTCCAGAAGAACATTTTTCCACATTCGTCTCAATTACATTTGGGCTTTAGGTTATAACCTTCTAGGCATTCCAATCGCTGCTGGAGTTCTTTTCCCTTTCACAGGATTCCGATTGCCTCCTTGGATTGCTGGGGCTGCTATGGCAGCCTCATCTGTTAGTGTTGTTTGTTGTTCTCTATTGTTGAAATATTATAGGAGGCCTAAGAAACTGGACAAGCTTGAGATTCGAGGCATTAGCATTGAATGA 3384 0.4521 MASKLLALSCMGSEGRVRPWTRPHYPSMPTYPKAEEGSSTTVEGSEVKALFSVIGMTCSACAASVEKGIKRLPGIREAVVDVLNNRALVLFYPSFVNCTYHMHPPITPNNFSNFGYKVNGDLQTHFRTKKFFKKKKKEFLGLHRKGSMASKLLALACIRSNGWDRLLTRPHYPSMPTYPKGVAAKGSEAKALFSVLGMSCSACAGSVEKAIKRLPGIREAIVDVLNNRAFVIFYPSFVNEETIREAIEDTGFEATLLRDEMNDRSVQVCRITVTGMTCTSCSSTVESALQAIPGVLKAQVALATYEAEVHYNPNIVNYNQILEAIEDTGFEATLISSGEDISKVELQVDGVRTEHSMRIVETSLQALPGVQDIELYPDLKKISVSFKPDVTGPRNFINVTEKIGSGRFKAKLFSQQGERRDTHGRKEIKQYYRSFLWSLVFTIPVFLTSMILMYIPGIKHGLDTKVVNMLTVGQLLRWVLSTPVQFIIGRRFYIGSYKSLRHGSANMDVLIALGTNAAYFYSVYSVLRAASSPHFEGTDFFETSAMLISFILLGKYLEVLAKGKTSNAIAKLMNLTPDTAILLTLDDEGNVADEEEIDSRLIQKNDLIKIIPGAKVASDGYVVWGQSHVNESMITGEARPVAKRKGDPVIGGTVNENGVLHVRATRVGSESALSQIVRLVESAQLAKAPVQKFADRISKFFVPLVILISVTTFLAWFLAGRINAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVQCIVFDKTGTLTVGKPVVVNTRLLINMVLQEFYELVAGAEVNSEHPLAKAIVEYAKKFKDEENPAWPETRDFVSIPGHGVKAIVRNKEIIVGNKSLLADHNIAVPVEAEDMLAEAEEMAQTGILVSINGEVAGVVAVSDPLKPGAQEVISILKSMNIKSIVVTGDNRGTANSIAREVGIDEVFAETKPEQKAEKVKELQAAGYTVAMVGDGINDSPALVAANVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRRTFFHIRLNYIWALGYNLLGIPIAAGVLFPFTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPKKLDKLEIRGISIE 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1408 1127 ProSitePatterns Heavy-metal-associated domain. 195 224 IPR017969 GO:0046872
Mibi12g1408 1127 CDD HMA 193 255 IPR006121 GO:0046872
Mibi12g1408 1127 FunFam Copper-transporting ATPase HMA5 266 337 - -
Mibi12g1408 1127 Gene3D - 342 404 - -
Mibi12g1408 1127 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 547 1076 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi12g1408 1127 ProSitePatterns Heavy-metal-associated domain. 273 302 IPR017969 GO:0046872
Mibi12g1408 1127 SUPERFAMILY HMA, heavy metal-associated domain 187 258 IPR036163 GO:0046872
Mibi12g1408 1127 ProSiteProfiles Heavy-metal-associated domain profile. 48 120 IPR006121 GO:0046872
Mibi12g1408 1127 SUPERFAMILY HAD-like 793 1104 IPR036412 -
Mibi12g1408 1127 Gene3D - 761 1055 IPR023214 -
Mibi12g1408 1127 CDD HMA 51 94 IPR006121 GO:0046872
Mibi12g1408 1127 SFLD p-type atpase 776 1050 IPR044492 -
Mibi12g1408 1127 CDD HMA 271 333 IPR006121 GO:0046872
Mibi12g1408 1127 TIGRFAM TIGR00003: copper ion binding protein 271 332 IPR006122 GO:0005507
Mibi12g1408 1127 TIGRFAM TIGR00003: copper ion binding protein 192 254 IPR006122 GO:0005507
Mibi12g1408 1127 Pfam E1-E2 ATPase 593 772 - -
Mibi12g1408 1127 Coils Coil 1116 1127 - -
Mibi12g1408 1127 FunFam Copper-transporting ATPase 1, putative 562 684 - -
Mibi12g1408 1127 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 507 1107 IPR027256 GO:0006812|GO:0016020|GO:0019829
Mibi12g1408 1127 Gene3D - 267 339 - -
Mibi12g1408 1127 SFLD C1.7: P-type atpase like 776 1050 - -
Mibi12g1408 1127 ProSiteProfiles Heavy-metal-associated domain profile. 343 404 IPR006121 GO:0046872
Mibi12g1408 1127 ProSiteProfiles Heavy-metal-associated domain profile. 268 334 IPR006121 GO:0046872
Mibi12g1408 1127 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 97 - -
Mibi12g1408 1127 Gene3D - 879 929 IPR023299 GO:0000166
Mibi12g1408 1127 Gene3D - 801 878 IPR023299 GO:0000166
Mibi12g1408 1127 FunFam Copper-transporting ATPase HMA5 188 259 - -
Mibi12g1408 1127 PRINTS P-type cation-transporting ATPase superfamily signature 945 955 - -
Mibi12g1408 1127 PRINTS P-type cation-transporting ATPase superfamily signature 923 934 - -
Mibi12g1408 1127 PRINTS P-type cation-transporting ATPase superfamily signature 794 808 - -
Mibi12g1408 1127 PRINTS P-type cation-transporting ATPase superfamily signature 630 644 - -
Mibi12g1408 1127 PRINTS P-type cation-transporting ATPase superfamily signature 1021 1033 - -
Mibi12g1408 1127 PRINTS P-type cation-transporting ATPase superfamily signature 998 1017 - -
Mibi12g1408 1127 SUPERFAMILY HMA, heavy metal-associated domain 264 338 IPR036163 GO:0046872
Mibi12g1408 1127 SUPERFAMILY Calcium ATPase, transduction domain A 594 680 IPR008250 -
Mibi12g1408 1127 SUPERFAMILY HMA, heavy metal-associated domain 44 97 IPR036163 GO:0046872
Mibi12g1408 1127 Pfam Heavy-metal-associated domain 51 89 IPR006121 GO:0046872
Mibi12g1408 1127 Pfam Heavy-metal-associated domain 271 331 IPR006121 GO:0046872
Mibi12g1408 1127 Pfam Heavy-metal-associated domain 193 253 IPR006121 GO:0046872
Mibi12g1408 1127 SUPERFAMILY HMA, heavy metal-associated domain 338 405 IPR036163 GO:0046872
Mibi12g1408 1127 SUPERFAMILY Calcium ATPase, transmembrane domain M 539 786 IPR023298 -
Mibi12g1408 1127 Gene3D - 43 118 - -
Mibi12g1408 1127 Gene3D - 184 256 - -
Mibi12g1408 1127 PRINTS Copper-transporting ATPase 1 signature 59 77 - -
Mibi12g1408 1127 PRINTS Copper-transporting ATPase 1 signature 435 456 - -
Mibi12g1408 1127 PRINTS Copper-transporting ATPase 1 signature 294 317 - -
Mibi12g1408 1127 PRINTS Copper-transporting ATPase 1 signature 323 343 - -
Mibi12g1408 1127 PRINTS Copper-transporting ATPase 1 signature 490 515 - -
Mibi12g1408 1127 PRINTS Copper-transporting ATPase 1 signature 268 293 - -
Mibi12g1408 1127 PRINTS Copper-transporting ATPase 1 signature 470 490 - -
Mibi12g1408 1127 CDD P-type_ATPase_Cu-like 433 1108 - -
Mibi12g1408 1127 FunFam Probable copper-transporting ATPase HMA5 896 1055 - -
Mibi12g1408 1127 Gene3D - 562 684 - -
Mibi12g1408 1127 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Mibi12g1408 1127 ProSiteProfiles Heavy-metal-associated domain profile. 190 256 IPR006121 GO:0046872
Mibi12g1408 1127 Pfam haloacid dehalogenase-like hydrolase 791 1012 - -
Mibi12g1408 1127 ProSitePatterns E1-E2 ATPases phosphorylation site. 796 802 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1408 Mibi-ChrMibi12 29714015 29721945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1408 1 97 Primary Pumps ATPases AT1G63440 46.535 1.35e-18 90.1