Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1343 ATGCGGATAGAGTTAAAAGAGCCTCTTTGCAATTCCTCTCTCACTCTCTTTCTCTCTGATTGTGACCTGGAAGCTGCAATGGCAAGCGAATTTGAGAAGAAAGCCAAAGAAGCCTTCTTTGACGATGATTTCTCTCTTGCTGTTCAACTCTACTCCCAAGCTATCGACTTGGATCCCTCCAACGCCGATCTTCTCGCCGACAGAGCTCAGGCCCACATTAAACTCAACAACTTCACTGAAGCGGCTTCGGATGCAAGCAAAGCCATCGAATTGAACCCGTCGTTGATAAAAGCGTATCTTCGTAAAGGGACTGCATATTTAAAGCTTGAAGAGTATCATACTGCCAAGGTGGCACTTGAGACTGGTGCTTCTTTGTCTGAAAACGATTCAAGATTCACCAAGTTGCTCGAAGAATGCAATCGTCATGTTCCAAAGGATTTCAATGACCACCCTAGCTCCATTTCATCAAATGGGGCAGCATCGACGGTGTTGCCTAGTAAAACTGAAGAAGATGAAAGATCAAGGTGTGCAGATCAAGCACTCACTGATACCTCTGTGAAACCAAGATACAGACATGAATACTACCAAAAGCCAGAAGAAGTGATTTTGACAATTTTTGCAAAAGGAATACCAGCAAAAAATGTGGATGTTCAGTTTGGTGAACAAATTCTGAGCGTTGCTTTTGATGTTCCTGGCCAAGAAGCCTACCACTATCAAACTCGATTGTTTGGAAAGATAATACCTGATAAGTGCAGATTTGAGGTGCTGTCAACCAAAATTGAAATCCGGTTAGCAAAAGCTGAAGCTATCAGTTGGACATCTTTGGAATATAGCAAGGATGCACTTTCTCAGACAAAAAATATCCCATCAGCTGGATCTCATAGGCCTGCATACCCATCATCAAAGCCAAAGAAAGATTGGGATAAGCTGGAAGCTCAAGTGAAGAAAGAGGAGAAGGAAGAAAAGCTAGATGGTGATGCTGGTTTGAACAAGCTGTTCCGAGATATATTCCAAAATGCAGATGAGGACATGAGGAGAGCCATGACCAAGTCTTTTGTGGAGTCGAATGGGACAGTTCTGTCAACAGACTGGAAAGAAGTGGGATCAAAGAAGGTCGAAGGAAGTCCTCCTGAAGGTATGGAGATGAAGAAATGGGAATATTGA 1164 0.4313 MRIELKEPLCNSSLTLFLSDCDLEAAMASEFEKKAKEAFFDDDFSLAVQLYSQAIDLDPSNADLLADRAQAHIKLNNFTEAASDASKAIELNPSLIKAYLRKGTAYLKLEEYHTAKVALETGASLSENDSRFTKLLEECNRHVPKDFNDHPSSISSNGAASTVLPSKTEEDERSRCADQALTDTSVKPRYRHEYYQKPEEVILTIFAKGIPAKNVDVQFGEQILSVAFDVPGQEAYHYQTRLFGKIIPDKCRFEVLSTKIEIRLAKAEAISWTSLEYSKDALSQTKNIPSAGSHRPAYPSSKPKKDWDKLEAQVKKEEKEEKLDGDAGLNKLFRDIFQNADEDMRRAMTKSFVESNGTVLSTDWKEVGSKKVEGSPPEGMEMKKWEY 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1343 387 Pfam CS domain 191 266 IPR007052 -
Mibi12g1343 387 SUPERFAMILY HSP20-like chaperones 183 285 IPR008978 -
Mibi12g1343 387 Gene3D - 182 290 IPR008978 -
Mibi12g1343 387 ProSiteProfiles TPR repeat profile. 28 61 IPR019734 GO:0005515
Mibi12g1343 387 MobiDBLite consensus disorder prediction 286 307 - -
Mibi12g1343 387 ProSiteProfiles CS domain profile. 187 276 IPR007052 -
Mibi12g1343 387 FunFam Protein SGT1 homolog 27 161 - -
Mibi12g1343 387 SUPERFAMILY TPR-like 27 139 IPR011990 GO:0005515
Mibi12g1343 387 Pfam SGS domain 305 385 IPR007699 -
Mibi12g1343 387 PANTHER PROTEIN SGT1 HOMOLOG 27 385 IPR044563 GO:0051087
Mibi12g1343 387 Gene3D Tetratricopeptide repeat domain 18 148 IPR011990 GO:0005515
Mibi12g1343 387 Pfam Tetratricopeptide repeat 97 129 IPR019734 GO:0005515
Mibi12g1343 387 MobiDBLite consensus disorder prediction 146 174 - -
Mibi12g1343 387 ProSiteProfiles SGS domain profile. 297 387 IPR007699 -
Mibi12g1343 387 MobiDBLite consensus disorder prediction 149 164 - -
Mibi12g1343 387 CDD p23_CS_SGT1_like 193 276 - -
Mibi12g1343 387 ProSiteProfiles TPR repeat profile. 62 95 IPR019734 GO:0005515
Mibi12g1343 387 MobiDBLite consensus disorder prediction 367 387 - -
Mibi12g1343 387 FunFam Protein SGT1 homolog A 185 289 - -
Mibi12g1343 387 SMART tpr_5 96 129 IPR019734 GO:0005515
Mibi12g1343 387 SMART tpr_5 28 61 IPR019734 GO:0005515
Mibi12g1343 387 SMART tpr_5 62 95 IPR019734 GO:0005515
Mibi12g1343 387 Pfam Tetratricopeptide repeat 43 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1343 Mibi-ChrMibi12 29074133 29078407 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1343 25 138 U-box Gene Family AT3G07370 27.193 1.10e-07 50.8