LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi12g1298	ATGGAGGATGAGAGGAGGTGGGAGCCGAGCACACTTACCAATGAGCTACTTCAAGGAATGGAAGCAGCTAGGAAGTTGATGGTAGAATTCAGGACAGAATCTTCAGTAGAGACCAGGGATTTGCTGGTACAGAGGGTATTATCATCTTATGAAAAGGCTCTGCTAATTCTGAAATGGAATGCCTCAAACACCAACCCTCTTCCCATGGGAACAGTGGTTAGTTTGCCACCAGAGTCTCCAATATCTGTCAACGTAAGTCCCTTCAGAGATGACATTGATGGGGATCATCCTGAGCTCAAACCTGATTCCAAGAAAAGAAAGATGATGCCCACATGGATGGAACAAGCAAGGTCTAGCTCTGAGACTGCACTTGAAGGACCACAAGATGATGGCTTCAGCTGGAGAAAATATGGACAGAAAGACATCCTGGGAGCAAAATATCCTAGAAGTTACTATAGGTGCACCTTCCGCAAGACTCAGAACTGCTGGGCCACGAAGCAGATACAAAGATCAGATGAAGATCCTTCTGTATTTGACATCACTTACCGAGGAAAGCATACTTGTTCCCTGGGAAATAATGCTGTTCAACCACCTAAGTCTCCAGACCAACAGGAGAAAATTCATAATAATGAAAGCGACATTAGCCATCTCGCTCCAATACAAGAGAGCCTAATGAAATTCAGAAATAACCTGAGTGTCAATACAGATAACCTTAAAAACGAGGAGATAGCAAATCCTTTTGCTTTCCTTTCAACTTCAGCTGGATACATGACACCAGCAGAAAGCCACAGTTTGCCTCCCATGGCACTAGAGAATGATCCCTTCTGGGGGAACCTTTCACAAACAAACTTGCTATCTCCAAACACGCCAGAATCACACTATTTACCATCACTGTCTTTCAAGCTGGATGAGTTCCATGGCATCAGAAACCAGCCATGCTCAGAATCTGACATTACTGAGATCATTTCAGCCAACACATCAGCCAGCAATTCTCCAATTCTCGATTTCAATTTCCCCATTGGTCAGGTTGAATTTGATCCAAATTTCCCTTTTGACGCCCCAGGACTTTTCCCATAA	1077	0.4401	MEDERRWEPSTLTNELLQGMEAARKLMVEFRTESSVETRDLLVQRVLSSYEKALLILKWNASNTNPLPMGTVVSLPPESPISVNVSPFRDDIDGDHPELKPDSKKRKMMPTWMEQARSSSETALEGPQDDGFSWRKYGQKDILGAKYPRSYYRCTFRKTQNCWATKQIQRSDEDPSVFDITYRGKHTCSLGNNAVQPPKSPDQQEKIHNNESDISHLAPIQESLMKFRNNLSVNTDNLKNEEIANPFAFLSTSAGYMTPAESHSLPPMALENDPFWGNLSQTNLLSPNTPESHYLPSLSFKLDEFHGIRNQPCSESDITEIISANTSASNSPILDFNFPIGQVEFDPNFPFDAPGLFP	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi12g1298	358	SUPERFAMILY	WRKY DNA-binding domain	127	190	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mibi12g1298	358	ProSiteProfiles	WRKY domain profile.	123	191	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mibi12g1298	358	Pfam	WRKY DNA -binding domain	129	188	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mibi12g1298	358	Gene3D	WRKY domain	114	190	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mibi12g1298	358	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	10	263	IPR044810	GO:0003700
	Mibi12g1298	358	MobiDBLite	consensus disorder prediction	85	111	-	-
	Mibi12g1298	358	MobiDBLite	consensus disorder prediction	89	111	-	-
	Mibi12g1298	358	FunFam	WRKY transcription factor 53	114	191	-	-
	Mibi12g1298	358	SMART	WRKY_cls	128	190	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi12g1298	Mibi-ChrMibi12	28565829	28567087	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi12g1298	7	240	WRKY Transcription Factor Family	AT4G23810	45.594	3.80e-61	197

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Mibi12g1298		WRKY	2.3e-26	CL0274