Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1276 ATGGCTAGTTTCCCAGATTGCTTCTTATTTTCAGCAATACTAATTATCCTTCTTCATCACATAACAAGAACCACCCAACAATTAACATGTGCATCAACACACTGTGGAGACCCTTCACTAGGACCTTTAATTCAATCCCCCTTTTATATCAAAGGAGTTCAAAGTGACGATTGTGGGGTCCCAAATTTCGGAGTTTCCTGCAACAACCTTAACCAGACATTGATCACACTCGGAGATGCCGGAGTTTTTGCCGTCAAAAAAATCTCTTTCAAAAACCATGAAGTTCGTTTAAATGACCCAAATAATTGTCTTCCCTTAAGGTTCCTCAACGGTGACTTGGATCATAATCTTCAAGGTTTGCCTTTCCGGTTGAGCCCCGATTACTTTAGTTCTGTCAACGTTGACTTTTTCAACTGTACTGTTCCATTGCCTGCTAAGTCTCTCCGGCTAGCTCACATAATACCTTGCCTTGGTGGCGCCGACAATTTCACAGTGGTCGCCGTTTTGTCGGATCCATCATTTCCAACGACGTCGATGTCGTTACCGGAAAAATGCCGGCATATTTCGTCGTCTTCATTTCCGGTTTATAGTTTTGAGCTTGGACAATTATGGGACCACCTTTACTCCGATATTAGGTTTAACTGGAATGAATGCATGTATATGGATCCTGATCATGAAGACACTGCTTGCTATAACAATTTGCCAGGTACGTGCCATAATAATGTCATGATACCAAAGTATTTCTAACCTCCAAGTTACAAAATTTACAAATTATTAGTGGTGGGAGCAGCTGGAACGTTATGCTTTTGTGTGGCCGGACTTGCACATTTACTAGGGTTTAAGGTGGAGCCTTCGGACGGTATGCGACGGAGGAGGATGAATGGAGAGTCGGAGAGAAACACGGCGGCGGAATCGGTGGAGGTGGGGATGGGTCTTGATGAGTCAACCATTGAACAATATCCCAAAACGCAAGTTGGTCACAGTGGAAGATTATTATTAGGTGACAATAATGTTTGCTCTATATGCCTTTCAGAGTATGAGCCAATGGACACATTGAGAACAATCCCTCACTGTAATCACTATTTTCATGCCCATTGTATAGATGGTTGGCTCAAGAAGAAGGGCACGTGCCCTTTATGTCGTCATCTTCCCCATGCATCTATTTCGTTGTCCCTTTCTTCATCGGATTCTCATAGATCGTTGATCCCCAGTTAA 1215 0.4305 MASFPDCFLFSAILIILLHHITRTTQQLTCASTHCGDPSLGPLIQSPFYIKGVQSDDCGVPNFGVSCNNLNQTLITLGDAGVFAVKKISFKNHEVRLNDPNNCLPLRFLNGDLDHNLQGLPFRLSPDYFSSVNVDFFNCTVPLPAKSLRLAHIIPCLGGADNFTVVAVLSDPSFPTTSMSLPEKCRHISSSSFPVYSFELGQLWDHLYSDIRFNWNECMYMDPDHEDTACYNNLPGTCHNNVMIPKYFXPPSYKIYKLLVVGAAGTLCFCVAGLAHLLGFKVEPSDGMRRRRMNGESERNTAAESVEVGMGLDESTIEQYPKTQVGHSGRLLLGDNNVCSICLSEYEPMDTLRTIPHCNHYFHAHCIDGWLKKKGTCPLCRHLPHASISLSLSSSDSHRSLIPS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1276 404 CDD RING-H2_PA-TM-RING 338 381 - -
Mibi12g1276 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 386 IPR013083 -
Mibi12g1276 404 SUPERFAMILY RING/U-box 331 384 - -
Mibi12g1276 404 Pfam Ring finger domain 338 381 IPR001841 -
Mibi12g1276 404 Pfam Wall-associated receptor kinase galacturonan-binding 30 99 IPR025287 GO:0030247
Mibi12g1276 404 ProSiteProfiles Zinc finger RING-type profile. 339 381 IPR001841 -
Mibi12g1276 404 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 383 - -
Mibi12g1276 404 SMART ring_2 339 380 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1276 Mibi-ChrMibi12 28345812 28347749 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1276 25 384 C3H Transcription Factor Family AT2G25410 31.989 2.22e-39 143