Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1275 ATGGCTCATTCCTCATGTTTCATCTTCATCTTCTTCCTCATTTATCCCACCGCATCATCAAGCTTTCATCCCTGCGAGATAACAACATATTGCGACATAAACGAACCTCCCATTCAATTCCCTTTCCAGTTAATCAGAGACGAACCAAATCATCAAACCAACAACAACATTTCCCGTTGTGGCTACCCAGGTTTTGAACTTTCCTGCAACAAAAAAAGCCAAACCATGATCCATCTCCCAAACTCTGGTCACTTCCTGGTAGACACAATCTCCTATGCAGATCAAAAGATTTGGATCAGAGACCCCAATAATTGCCTCCCCAAAAGATTCTTAAACAAAGAATTCAACCTCAAAGACTCTATCTTTCAACTCAGCGATGATTATGTTCTTATGGATTTCACCTTTTTCAACTGTTCCTCCAACGTCACAGACCAATACCCACTTCGACCCGTTATCCCCTGTTTAAGCTCCGACCCGAATCAAAACTATTCGGTGGTAGCTGTTTTGTCGGATCCTACCTTTTCTTCGCCATGGGCCGAATGGTGTGACCCGATTTCATCTGCTTCAGTTCCTTATTCTATTACAGATAGACTATACTGGATGGACTTAAACGCTGATATAGGTCTCCAATGGAACACACCAAGTTGTGGAGATTGTGTAGCCAAAAATGGAAAGTGTGAGTTTTTGAAGAATTCTGGTCTTGAAGTTGCTTGTTATTTACCACATCATGGTGGGATCTCCAAGTTTGCCAAGTTTGGATTAAGTTTTGGTGTGGGAATTCCTGGATTTCTGTGTTTGGTTTGGATTGTGTATCTGTGTAAAGGGAAGGGAAGAGAGAATGAAGAGAGAAGAAGGCAGAGGAATGATATTGAACTGAATAATCAAAATAATAATGTTGTTGCTGGGAGGTCTTCTGTTGTGGTTATGGGGCTTGATGGGGAGACGATAGAGAAGTATCCGGTGACCCGTATTGGTGATAGTGGGCGGTTACCCGACCTGAATAACAATGTGTGCTCTATATGTTTGGGTGAGTACCAACCTCAAGATATGTTAAGGACTATACCAGATTGTAATCACTATTTTCATGCCAATTGTATTGATTCATGGTTACACATGAACGCTACTTGTCCCTTGTGTAGGAAATTAGCACATTCCTAA 1158 0.4154 MAHSSCFIFIFFLIYPTASSSFHPCEITTYCDINEPPIQFPFQLIRDEPNHQTNNNISRCGYPGFELSCNKKSQTMIHLPNSGHFLVDTISYADQKIWIRDPNNCLPKRFLNKEFNLKDSIFQLSDDYVLMDFTFFNCSSNVTDQYPLRPVIPCLSSDPNQNYSVVAVLSDPTFSSPWAEWCDPISSASVPYSITDRLYWMDLNADIGLQWNTPSCGDCVAKNGKCEFLKNSGLEVACYLPHHGGISKFAKFGLSFGVGIPGFLCLVWIVYLCKGKGRENEERRRQRNDIELNNQNNNVVAGRSSVVVMGLDGETIEKYPVTRIGDSGRLPDLNNNVCSICLGEYQPQDMLRTIPDCNHYFHANCIDSWLHMNATCPLCRKLAHS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1275 385 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 381 - -
Mibi12g1275 385 Pfam Ring finger domain 337 380 IPR001841 -
Mibi12g1275 385 Pfam Wall-associated receptor kinase galacturonan-binding 30 101 IPR025287 GO:0030247
Mibi12g1275 385 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Mibi12g1275 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 384 IPR013083 -
Mibi12g1275 385 CDD RING-H2_PA-TM-RING 337 380 - -
Mibi12g1275 385 Coils Coil 278 298 - -
Mibi12g1275 385 SUPERFAMILY RING/U-box 331 382 - -
Mibi12g1275 385 SMART ring_2 338 379 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1275 Mibi-ChrMibi12 28341316 28342473 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1275 28 380 C3H Transcription Factor Family AT2G46495 32.500 2.11e-47 163