Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1274 ATGACCACCTCGTTCTTATCGCTAATACTACTGTTACATCTCATAACAATCCAGTGCTCAAGTGGTGCTACTGATAAAGAAGAACCTTGCCCAAACACATCTTGTGGTGGAATCGAAATCAAATTCCCTTTCGGTTTAAAAGGAACCAATCAGAGCAGTCGATGTACCTACCCCGATTTCAGTGTTTGGTGCAACAATCAAAGGCAAACCATCCTCACCTTACCAGGTTCCGGTGGTGATTTGGTGATCAAGGCCATCGATTATTCCTCTCAAGCCCTTTTGGTCAACGATCCTGGTCAATGCCTACCAAAACGCTTCTTGCAGGGTCGTTTCGATCTTTCTTCTTCTCCCTTTAAATTCGACCCTGCACTTTACTATCCCATTAACCTCACTTTCCTTCTTTGCCCTTCCAACCTCACGCAAAATCCACTCCCTACAGTTCATTGTCTTAATGATCTCGTCAATTCCTCGTTTTATTTCACGTACCTTTGGACGAGAACAATTCCTTCGTTCTTGAACGAATCATGTGAGGTTGCGAATTCCTCTGTTCCTTACCCGATTTCCAATATTGACCCGTGGCCTTTCGGGGTTGACCTCGGCTATGATTTACAGTTGACTTGGGATAGGCCACGTTGTGGCCGTTGTGAAGATCGCTGGCAAGATTGTGGGTTCGCCGCTGGTATTGGTAACCGAACAGCATGTTTCTCTCGTCCCCAGGAAAGTTCAGGTCTCCCAAGAGGTGTAAAATATGGGCTATCAATAGGAGTGGGAATACCTGGACTCCTATGTCTAATAGGGTTCAGTTGTTTCATTTGCAGCAAGCTACGACGTCGTCGCAGTCTCCCGCCCAGCATAGATCTTCCCATTACATCATACGTGGTCCAGTCCGGCCCATTTAGAATGGGCCTTGATGGGTCCACAATAGAGAAGTATCCAATGATTCTTCTTGGCGAGAGTAAGAGGCTACCCAAGCCCAATGATAACACTTGCTCAATATGCCTGTCGGAGTATGAGCCCAAAGAGACATTGAGAACCATACCCGATTGCAAGCATTATTTTCATGCACAGTGTATAGATGAATGGCTCAAGATGAATGCCTCGTGTCCCGTTTGCAGGAATTCACCTACACTCACACCTGCTTCTTCTTCTGCTTCAGAGTCATCTGTTATGTCTCCTTCTTCCTCCGTATCCTCTTCACATTAA 1203 0.4597 MTTSFLSLILLLHLITIQCSSGATDKEEPCPNTSCGGIEIKFPFGLKGTNQSSRCTYPDFSVWCNNQRQTILTLPGSGGDLVIKAIDYSSQALLVNDPGQCLPKRFLQGRFDLSSSPFKFDPALYYPINLTFLLCPSNLTQNPLPTVHCLNDLVNSSFYFTYLWTRTIPSFLNESCEVANSSVPYPISNIDPWPFGVDLGYDLQLTWDRPRCGRCEDRWQDCGFAAGIGNRTACFSRPQESSGLPRGVKYGLSIGVGIPGLLCLIGFSCFICSKLRRRRSLPPSIDLPITSYVVQSGPFRMGLDGSTIEKYPMILLGESKRLPKPNDNTCSICLSEYEPKETLRTIPDCKHYFHAQCIDEWLKMNASCPVCRNSPTLTPASSSASESSVMSPSSSVSSSH 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1274 400 SMART ring_2 330 371 IPR001841 -
Mibi12g1274 400 MobiDBLite consensus disorder prediction 377 400 - -
Mibi12g1274 400 ProSiteProfiles Zinc finger RING-type profile. 330 372 IPR001841 -
Mibi12g1274 400 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 375 - -
Mibi12g1274 400 Pfam Wall-associated receptor kinase galacturonan-binding 30 97 IPR025287 GO:0030247
Mibi12g1274 400 Pfam Ring finger domain 328 372 IPR001841 -
Mibi12g1274 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 376 IPR013083 -
Mibi12g1274 400 CDD RING-H2_PA-TM-RING 329 372 - -
Mibi12g1274 400 SUPERFAMILY RING/U-box 323 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1274 Mibi-ChrMibi12 28334193 28337704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1274 26 376 C3H Transcription Factor Family AT2G25410 35.657 3.29e-54 182