Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1264 ATGGAAGCGGATTTCGTCGACAATGGCATGTTCATTGAAGAACCCTATGAGGCTGATGAGAACGCGAACAATGAGAATTTATATATTGAAGGGGAAAAATGTGGAATTTGCATGGATATTGTCATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGTTTTGCCTGCATTGACAACTGGGCTTCCATTACAAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACATGTGTTCCAGTATATGATACCATTGGAAGCAATAAAATTGAAGATGACATGTTATCCAGAGATGATGACTGGTCCATTGAAGAGAAGAATAACACACTGTCATTTCCATCATACTATATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAAATTCGAAGCGGATCGGCAACTATTGAAGGTGATTTGAGCCTTGATACATCAATTGCTTGTGATTCTTGTGATATATGGTATCATGCTTTTTGTGTGGGATTTGATCCTGAAGGTACGTCTGACGTTACATGGTTATGCCCAAGATGTATGCCAGATAAAGTTACTGACAACATGGATGCCAGTTCATTAGAGAAGGCAACCGTAGAAATTAACCCAGAAAATGGTGACAAGGAATGTGAGGCTGAGGAATGTTTTTCAAGAAAAGTTTCTGTATCTGTTGCTGATGCTGGAGAGACAGCTGTTGTTGTCTCTTTGGTTGAAGGAAACCAATGGATTCCGGTACCAAGAGAGAAGAGTTTGTCACCCCCTGAAGCTAGCGAGAATCCAATGACTGAATCATGTGTTTCCATCTCTGATGCAAATAATCCCCAAAGTAATACAGAGAAGCCTATTAATTCACCAAGGGGGCAACAGGAGCTGGAGCTGTCCTTATCACACAACGTGGCCTGTAGCTTGTGCTCTGACACATGGCCTGATGATTTGAAAAAAGACACTTACGATGAAAGGAGTGATCCAAGTAGTTTTAGTGGAGCCAAGATATTGAATGAATCTCATGAAAGAGCGAGAGCATCTAGAAATGGATCTGATATGGGTGTTAATCTCGGTTTGTCAGTTGGCTCCTTTTTATGTGTTGATGACACAGACATGAATGCAACAGGAGATCAAGAATCTGATCTCCAGCAGTCATGTTCAGAAGAATTTATTTTGAAAGGAGATGAAGTGGAACCAAATTCTCTTGACGTCAATGCTAGAGTAATGGGGGAAAAGAGAAAGCATGCTGATTACAGGAATGATGAGGTTGATATAGAAGTTGATGAAGATGCTGAGCTCAAACCTGAAGTGTCGCAAAAAAAACTTAGAACCGAGAGCGGTCTGCTGATTAAACACGAGAACGTAGTAGGCACTCCTCTTTCAGATAGTACTAAAACAACCCCTTCTACTACACCCATTTGCAGACATGATGATACAAAACATCATTCAGCAAAGGAGAACGCTGCATCAGATATAATGAGTATAGTTAAAGGCACAAAGTGGAAGCCTTCAAAGGGAATTTCTTGCTCCAACTCTTATAAAAAGTTATCTAAAAATAACGAAAATATGGCAGGTTTGAGGGTAAAAAAGATCATGAAGAGAGCTTCAGATCATGGGGAGTTATCCTTAGTTCAAAACCTTCGGGAAGAAATTAGAGAAGAGGTCCGTAACAAATCCTCTAAAAATTTTGAAGAAAATCTTGTTGATACAAAGCTTCTTGCAGCATTCAGGGCTGCTCTAGTAGGGCCTAAAACTGAACCTACAAATAAGTTGCCCCCTATGGCTTTGAAGACAAAGAAGTCAATGTTGCAGAAGGGAAAAGTTCGTGAACATCTAACTAGGAAAATTTTTGGGACTTCCAATGGAAGAAGAAAGCGCTCATGGGACAGAGACTGTGAAATTGAGTTTTGGAAACATCGTTGCATGAGAGCAACAAAGCCTGAAAAGATTGAAACTTTGAAGTCGGTTCTGGATCTTCTAAGAAAGAGTTCAGAGAGTCCAGAATTGAAAGAGAGTTCTGAAGGTCAGGCCAAAAGTTCTATTCTTTCCAGATTGTATTTAGCAGATACATCTGTTTTCCCACGAAAAGATGATTTCAAGCCAATTTCTGTCCTTGAAACTGCTGCTAACTCAGAGCAGAATAAAAAACCTAACCTTCCAGGAAATTCATCGAATAAGTCTATTGATAATAGTCCTATTAAAGCAAAAGAGATAAACAATGTTTTACCAAAGGCCAGAGATTGCTCATCTGAAAATAAAGTAAATAAGAAGATTGCACATAGCTCAGTTGGTGGTAAGTCTGCTTCTGGTAAATTACCTTCTAGCAGACACTCAGAAGGGGCAACAGGTTCTTGCCCTGGTAGCTCCAGACTTGACTCAAAGGAGTCATGCGTTAAATCAGATGGTATAAAGAGTGACAAAAGAAAATGGGCCTTGGAGGTACTTGCAAGAAAAACAGCCGCTGCTAGCAAGAAGACAAATGACAGTCAGGAGGATAATGCAATGCTTGGGGGAAATTATCCTTTATTGGCCCAATTGCCAGCTGATATGAGACCAGTATTAGCGCCCAGTCGCCACAATAAAATTCCTATATCAGTAAGGCAGACACAACTTTACCGCCTGACTGAACACTTCTTGAGGAATGCAAATCTGCCAGTCATTCGCAGAACTGCAGATACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTGGCTGACAGATCAAACAGCAAACTAGTGTATCTGAATCTCTGTTCACAGGAGCTCTTGCACCGCTCAAATAATATAAAATCCAATGGAGCAACAGATATAATTCCACAGGTCTCTTCAGCAGTCCCTACTGATAGATCAGAACAAAATATTGAGGATGATCTTTCAACTGACTCTGCAGTTCAAATGGCCCTTAAAAATGCTGGTCTTTCGTCTGATTCTCCTCCTTGTAGTCCAAGTGAGAATAGAGAAACATCAAATGAAAAAGTTGATCCTTCAGAGCCTGATAATATTCTCGAACTGGATTTTCAACCCGAGATGGATATTTATGGAGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGTGCAGGTGTTGCTAGAGGCTTAAATTCACAAGAAGAAGAAAATGAATCCAAAATGAAACTCATTTTCTCTACTATGAACTTGAAGAATTCAGATACTGTTTTGGATTCTATAGCGAGTTTGGAAAACAATGAAGTTCCACGAGATCCCTCCTGCTCAAATCATGATGGTGCGGCCAACACTGACCCTACAATTAATGCAGAGATTGGCAATCCTCCTTCCGAGGCCCTTCCCAGTGAGCCTTGTGATGCAGAATGCGATGAATTATATGGTCCAGAGAAGGAACCGCTCTCAAAAAAATTTCCGAATGAGGAATTTATAACATTGCCTGAAGAGGGCAAATCAGGAACTTCAACTGAAGGCAATGATTGTCATAATAAAGGACTAGCATCAGACCAAGCAGTAAATGCATCTGAATCTGGGAATGAAAATCTTGCAAAGAATATACCGGTCTCTGTTATTGCTGACAATTCGTCTAATGCATCTGATATTAACGAAAATTTGCAGAGGGGAGAGAAATCTGACACTGCAGCTGAGCAGTCTGACTCTACAAATCATATAGTGAGAAAGGTTGAAGCCTATGTCAAGGAGCATATCAGGCCACTGTGCAAGAGTGGTGTGATCACAGCCGAACAGTACAGGTGGGCTGTCGCAAAAACAACGGAAAAGGTTATGAAGTACCATTGCAAGGCCAAGAATGCCAATTTCCTCATAAAGGAAGGCGAGAAAGTGAAGAAACTGGCAGAGCAGTATGTTGAAACAGCCCAACATAATAGGAAAAATTGA 3867 0.4055 MEADFVDNGMFIEEPYEADENANNENLYIEGEKCGICMDIVIDRGVLDCCQHWFCFACIDNWASITNLCPLCQNEFQLITCVPVYDTIGSNKIEDDMLSRDDDWSIEEKNNTLSFPSYYIDENAVICLDGDGCKIRSGSATIEGDLSLDTSIACDSCDIWYHAFCVGFDPEGTSDVTWLCPRCMPDKVTDNMDASSLEKATVEINPENGDKECEAEECFSRKVSVSVADAGETAVVVSLVEGNQWIPVPREKSLSPPEASENPMTESCVSISDANNPQSNTEKPINSPRGQQELELSLSHNVACSLCSDTWPDDLKKDTYDERSDPSSFSGAKILNESHERARASRNGSDMGVNLGLSVGSFLCVDDTDMNATGDQESDLQQSCSEEFILKGDEVEPNSLDVNARVMGEKRKHADYRNDEVDIEVDEDAELKPEVSQKKLRTESGLLIKHENVVGTPLSDSTKTTPSTTPICRHDDTKHHSAKENAASDIMSIVKGTKWKPSKGISCSNSYKKLSKNNENMAGLRVKKIMKRASDHGELSLVQNLREEIREEVRNKSSKNFEENLVDTKLLAAFRAALVGPKTEPTNKLPPMALKTKKSMLQKGKVREHLTRKIFGTSNGRRKRSWDRDCEIEFWKHRCMRATKPEKIETLKSVLDLLRKSSESPELKESSEGQAKSSILSRLYLADTSVFPRKDDFKPISVLETAANSEQNKKPNLPGNSSNKSIDNSPIKAKEINNVLPKARDCSSENKVNKKIAHSSVGGKSASGKLPSSRHSEGATGSCPGSSRLDSKESCVKSDGIKSDKRKWALEVLARKTAAASKKTNDSQEDNAMLGGNYPLLAQLPADMRPVLAPSRHNKIPISVRQTQLYRLTEHFLRNANLPVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRSNNIKSNGATDIIPQVSSAVPTDRSEQNIEDDLSTDSAVQMALKNAGLSSDSPPCSPSENRETSNEKVDPSEPDNILELDFQPEMDIYGDFEYDLEDEDYIGAGVARGLNSQEEENESKMKLIFSTMNLKNSDTVLDSIASLENNEVPRDPSCSNHDGAANTDPTINAEIGNPPSEALPSEPCDAECDELYGPEKEPLSKKFPNEEFITLPEEGKSGTSTEGNDCHNKGLASDQAVNASESGNENLAKNIPVSVIADNSSNASDINENLQRGEKSDTAAEQSDSTNHIVRKVEAYVKEHIRPLCKSGVITAEQYRWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYVETAQHNRKN 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 1139 1156 - -
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 258 290 - -
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 1071 1110 - -
Mibi12g1264 1288 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Mibi12g1264 1288 SUPERFAMILY RING/U-box 24 79 - -
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 1071 1095 - -
Mibi12g1264 1288 ProSiteProfiles Zinc finger PHD-type profile. 66 186 IPR019787 -
Mibi12g1264 1288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 113 IPR013083 -
Mibi12g1264 1288 PANTHER RING FINGER PROTEIN 41, 151 115 1279 - -
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 972 1001 - -
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 457 471 - -
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 1187 1210 - -
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 315 350 - -
Mibi12g1264 1288 Pfam Ring finger domain 33 73 IPR001841 -
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 972 987 - -
Mibi12g1264 1288 SUPERFAMILY FYVE/PHD zinc finger 149 186 IPR011011 -
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 708 732 - -
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 765 791 - -
Mibi12g1264 1288 ProSiteProfiles Zinc finger RING-type profile. 34 73 IPR001841 -
Mibi12g1264 1288 Pfam PHD-finger 149 185 IPR019787 -
Mibi12g1264 1288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 191 IPR013083 -
Mibi12g1264 1288 SMART PHD_3 132 184 IPR001965 -
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 1195 1210 - -
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 248 290 - -
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 708 794 - -
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 457 484 - -
Mibi12g1264 1288 SMART ring_2 124 183 IPR001841 -
Mibi12g1264 1288 SMART ring_2 34 72 IPR001841 -
Mibi12g1264 1288 MobiDBLite consensus disorder prediction 1137 1156 - -
Mibi12g1264 1288 Coils Coil 1272 1288 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1264 29 76 C3H Transcription Factor Family AT2G39100 37.255 1.65e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi12g1264 PHD 3.5e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1264 12 28220189 28235401 Mibi12g1264 12 28220189 28235401 ECH