Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1254 ATGTTGAATCGTGGAGGGTCGTTTTCGATGTCTTCAGCTGAAGGTGGTTGTGGAGGGGATGATCTGTATGAAGAACTATGGAAGGCTTGTGCGGGACCACTTGGAGATGTTCCTCGTGCCGGCGAGAGGGTGTTCTATTTTCCACAAGGACACATGGAGCAATTGGAGGCATCAACAAATCAAGAGCTTAATCATAGGATTCCGGTGTTCAACCTTCCTTCAAAGATCCTTTGTCGTGTCGTGAACGTCCATCTACTGGCTGAGCAAGAAACTGACGAGGTTTACGCCCAAATTACTCTAGTGCCAGAATCCAATCAAAACGAGCCTACTAGCCCAGATCCATGCTCTGCCGAACCTCCTAGGCCAGCAGTTCACTCATTCTGCAAGGTTTTGACGGCATCTGATACAAGCACCCATGGTGGGTTCTCTGTTCTCAGAAAACACGCCACTGAATGCCTTCCTCCTCTGGACATGTCCCAACCAACTCCTACTCAGGAATTGGTTGCCAAGGATCTACATGGTTACGAGTGGCGCTTTAAGCATATATTCAGAGGTCAGCCTCGTAGACATTTGCTCACAACTGGATGGAGTACTTTTGTTACATCAAAGAGATTAGTTGCTGGAGATACCTTCGTGTTTTTAAGAGGGATGAATGGAGAATTACGTGTTGGAGTGAGGCGTCATGCTCGTCAGCAGAGTAGCATGCCATCATCTGTGATTTCCAGTCAGAGTATGCACCTAGGAGTTCTTGCAACTGCCTCTCATGCCGTTGCAACCCAAACTCTTTTTGTTGTATATTATAAACCAAGGACAAGTCAATTTATCATAAGCGTGAACAAGTACTTAGAGGCTATCAACAATAAGCTTACTGTTGGTATGAGGTTCAAGATGAGGTTTGAAGGGGATGAGTCTCCTGAAACTGACAAGAGATTTTCGGGCACTATTATTGGAGCGGAAGATATTTCTCCTCACTGGGTAAAATCTAGCTGGCGATCCCTCAAGGTTCAGTGGGATGAACCTGCAGCTGTTCCAAGACCAGATAAGGTTTCACCATGGGAAGTGGAACCTTCTCTGGCTCCCGTCACTTCATCTTCAGTTCAACCTCCCGTTGTAAAGACGAAGAGACCTCGGCCACCCAGCGAAATTCCAGAACTCGACACAACTTCCACTGCCTCTGCTTTCTGGAATTCAGAGCTGATGCAACCCGACACTACCCAACTTGGAGTTACGGCTGAAAGCAATAGGACTGACAATTCGAGCATGTGGCATCACAGTCAAGCTGAAATGATTAGTAAAAGCAGCAGCAGCACTCTTTCAAGAAATCAAACAGAAGGGAGTTGGCTATCTTCTCCCCATGCAAGCAGTCCTCCGCAACGGTTGCAGGACACGATAGATGATGGTAAGAGACTGAACAGTGATCATGTGCTTGAACAAGCTGGCAAGGAGAACAAAGTGGAGATTGCTACAAGCTGTCGATTGTTTGGGATTGAGCTTATTGGTCACCCCCAAATTTCATCTGCTATAGAGAAGGCACCTGCTCATGCAGCTGGTGTACTTAGTGGCCCTTCTGAGAGTCATGTCAATGCCTTGTCTGGAACTGATTCAGACCGCAAGTATAACATCTCAAAGGCTTCCTATGTGGGGAAACAAGAACAGCCGCAAATAAAGGAGACTCAGAGCAAGCAAATATGTTCCAGAAGTCGCACCAAGGTTCAAATGCAGGGGGTCGCCGTAGGTCGTGCTGTGGACTTGGCCATGTTGGATGGTTATGATCAACTTATAGAAGAGTTGGAGGAGATGTTTGACATAAAAGGACAACTTAAAGATAGGAAGAAATGGGAGATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTGGGTGATGATCCATGGCCTGAATTCTGTAATATGGTCAGAAGAATCTTCATTTGTTCAAGCCAGGATGTAAAGAAGATGAGTACAGGAAGCAAATTGCCTATTTCATCAATGGAAGGTGATGGGACAGTTATAAGTGGGAGCACAGCTGAAACCTGA 2037 0.462 MLNRGGSFSMSSAEGGCGGDDLYEELWKACAGPLGDVPRAGERVFYFPQGHMEQLEASTNQELNHRIPVFNLPSKILCRVVNVHLLAEQETDEVYAQITLVPESNQNEPTSPDPCSAEPPRPAVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGMNGELRVGVRRHARQQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKYLEAINNKLTVGMRFKMRFEGDESPETDKRFSGTIIGAEDISPHWVKSSWRSLKVQWDEPAAVPRPDKVSPWEVEPSLAPVTSSSVQPPVVKTKRPRPPSEIPELDTTSTASAFWNSELMQPDTTQLGVTAESNRTDNSSMWHHSQAEMISKSSSSTLSRNQTEGSWLSSPHASSPPQRLQDTIDDGKRLNSDHVLEQAGKENKVEIATSCRLFGIELIGHPQISSAIEKAPAHAAGVLSGPSESHVNALSGTDSDRKYNISKASYVGKQEQPQIKETQSKQICSRSRTKVQMQGVAVGRAVDLAMLDGYDQLIEELEEMFDIKGQLKDRKKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSTGSKLPISSMEGDGTVISGSTAET 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1254 678 SMART B3_2 127 229 IPR003340 GO:0003677
Mibi12g1254 678 MobiDBLite consensus disorder prediction 413 461 - -
Mibi12g1254 678 FunFam Auxin response factor 561 654 - -
Mibi12g1254 678 ProSiteProfiles PB1 domain profile. 566 647 IPR000270 GO:0005515
Mibi12g1254 678 Pfam Auxin response factor 253 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mibi12g1254 678 CDD B3_DNA 125 227 IPR003340 GO:0003677
Mibi12g1254 678 Pfam AUX/IAA family 458 650 IPR033389 -
Mibi12g1254 678 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Mibi12g1254 678 MobiDBLite consensus disorder prediction 413 465 - -
Mibi12g1254 678 FunFam Auxin response factor 288 361 - -
Mibi12g1254 678 SUPERFAMILY CAD & PB1 domains 567 642 - -
Mibi12g1254 678 Gene3D - 288 361 - -
Mibi12g1254 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 654 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mibi12g1254 678 FunFam Auxin response factor 125 229 - -
Mibi12g1254 678 Gene3D - 124 229 IPR015300 -
Mibi12g1254 678 MobiDBLite consensus disorder prediction 656 678 - -
Mibi12g1254 678 SUPERFAMILY DNA-binding pseudobarrel domain 118 256 IPR015300 -
Mibi12g1254 678 Gene3D - 562 654 - -
Mibi12g1254 678 Coils Coil 590 610 - -
Mibi12g1254 678 MobiDBLite consensus disorder prediction 342 386 - -
Mibi12g1254 678 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1254 Mibi-ChrMibi12 28137515 28141004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1254 18 659 B3 DNA Binding Superfamily AT4G23980 59.877 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mibi12g1254 AUX_IAA 3.4e-12 CL0072