Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1180 ATGAATGAGGGATTGAGGGCATGCTCTGCACCAAAAACCAGAAATAATTTGAATCCCTCGAATCCTGGCAGAGAAAACGCCAGTGTTCCTTGTCTTCTCCGTAATACACACTTTCCTACAATAAAATCCTCAAATTTCCTTTCCCTCCTTCTCTCTCTCCCTATGGGATCCGGTGGTAGTAAGGCCGTTGGTTCTTGCAATTCATCGTCGTCTTCGGGCAGTTTTCGTAAGGGTCGATCTAGAGGGCATAGAGGTTTTCAGTCGTATTGTTTAGGAACAACATCTGGATCTCATGACAGTGATAATGACGACCAGGTGTGTGATCAGAATAAAGAAAACGATAGTAATGCTACATACTTCAATGGTGATGAAACAGATGCAGATGAGATGATATCGGAGTCTTTCAGAAAGATTGAATCTGATAAAATGCCATGTATCCCTGCTAATGTTCACCTTGATGAGTGGAATCAAACAAGCATTTCCAATACTGCTTCTAGAACTGGTAGCAGTTCTGATCGTCCAGCTTCAACTCAGTCATTGAACCCTTCAAGCCGATTCCTATCTCGGTTTAGCCTTATTCCCGGTAATGTGAGCTTCAGATTAAGCAGAACCACAAGTTTGGGGTCATCCCAGCCTTGCCCTGTTTCTTCTGGAGGTCTCTCAATATTTAACAGCGAAGATGACCTTAATCCACAGCCTGGACCTACTGGTAGCTTGACTAATCAAAATGAAGCTCTACAACGCACTGACTTGCTTCCTGCATCACATTGCTATGAAGACACTTCTATAAATTTAAGGTCTAGCATCCCTTCATCAGATTCTCATAGCAGTTTGCAAAACAATTCAAATTCTTCTATGCAGCGTATGGTAAGAGATGAAAATGGCGCCAGAGAAGGGTTTAATATTAATTTATTTTCTCCAAGAATTCATGCCAGAACAGAAAATGTTGAGATGAGACATAATGATCGCAGAAATGGAGCTCGAGAACCTGTTGAGCGGAATGTCCGCTTTAGTCGTACTTTGAGTGTTGGAAGGCTTCGTGATAGGGTTCTTCGTCGAACAACAATATCAGACTTGACATTTTGCCCACTGCAACAAGAAAGGGATGCAACAGATGCTAGTCAAGATATTGGAAGACATGCAGGGGAGAGAGAGTCAAGAGTGCTACCATCTGATAGTGACTCTACTAGTTTCCCTTCTACATCTGGATATCCTCCATCCAATATGTCTAGCTCCTTGTTTGGCATCCAAGACTATGAGGTTGAGTCTTCACGATCTAGAGAAGCTAGGTACCGTGATCTGCTGGAAAATAGATCCAATTTCCTAGAACGTAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAACGATTGGGCAGCCGATTTGAAAACCTGTCTGGGCATGACAGGTCATGTATTTTGTCTGGCCAACATAGAAATGGTCGTTGTACATGCCAAATTAGTAGTCGTGATGCCCATTCTAATGATGATACTGGGGCTAGAGCTAGCATATCAAGAATTGTTATGCTCGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTCTATCTTCCCGACCTTCTGTTTCTTCTATTGGATCTGTTCCTGCACCTTATGAAGTTGTAGAATCTTTGCCTGTCAAATTATACACAAAATTGCATAAACATCAAGAGGATGCTGCTCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGATAGCATGCGAGTACTACCTTGTCACCATGAATTTCATGTAACATGCATAGACAAGTGGCTAAAGGAAATTCACAGGGTATGCCCACTATGCCGTGGGGACATCTGCATTGCTGATTCCATACCAACCGAGAACTAA 1872 0.4274 MNEGLRACSAPKTRNNLNPSNPGRENASVPCLLRNTHFPTIKSSNFLSLLLSLPMGSGGSKAVGSCNSSSSSGSFRKGRSRGHRGFQSYCLGTTSGSHDSDNDDQVCDQNKENDSNATYFNGDETDADEMISESFRKIESDKMPCIPANVHLDEWNQTSISNTASRTGSSSDRPASTQSLNPSSRFLSRFSLIPGNVSFRLSRTTSLGSSQPCPVSSGGLSIFNSEDDLNPQPGPTGSLTNQNEALQRTDLLPASHCYEDTSINLRSSIPSSDSHSSLQNNSNSSMQRMVRDENGAREGFNINLFSPRIHARTENVEMRHNDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRTTISDLTFCPLQQERDATDASQDIGRHAGERESRVLPSDSDSTSFPSTSGYPPSNMSSSLFGIQDYEVESSRSREARYRDLLENRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCQISSRDAHSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPYEVVESLPVKLYTKLHKHQEDAAQCYICLVEYEDGDSMRVLPCHHEFHVTCIDKWLKEIHRVCPLCRGDICIADSIPTEN 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1180 623 SUPERFAMILY RING/U-box 546 616 - -
Mibi12g1180 623 Pfam Ring finger domain 567 610 IPR001841 -
Mibi12g1180 623 SMART ring_2 568 609 IPR001841 -
Mibi12g1180 623 MobiDBLite consensus disorder prediction 161 182 - -
Mibi12g1180 623 MobiDBLite consensus disorder prediction 1 28 - -
Mibi12g1180 623 MobiDBLite consensus disorder prediction 265 287 - -
Mibi12g1180 623 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 55 622 - -
Mibi12g1180 623 MobiDBLite consensus disorder prediction 381 411 - -
Mibi12g1180 623 ProSiteProfiles Zinc finger RING-type profile. 568 610 IPR001841 -
Mibi12g1180 623 MobiDBLite consensus disorder prediction 203 241 - -
Mibi12g1180 623 MobiDBLite consensus disorder prediction 9 25 - -
Mibi12g1180 623 MobiDBLite consensus disorder prediction 61 126 - -
Mibi12g1180 623 CDD mRING-H2-C3H2C2D_ZSWM2 567 610 - -
Mibi12g1180 623 MobiDBLite consensus disorder prediction 391 411 - -
Mibi12g1180 623 FunFam Putative RING zinc finger domain superfamily protein 537 615 - -
Mibi12g1180 623 MobiDBLite consensus disorder prediction 61 76 - -
Mibi12g1180 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 532 614 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1180 Mibi-ChrMibi12 27107979 27112603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1180 289 617 C3H Transcription Factor Family AT5G45290 58.944 7.72e-113 347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1180 12 27107979 27112603 Mibi12g1180 12 27107979 27112603 ECH