Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1147 ATGGCTGCAAATCTGACTAGTGGAGCGATAATGACGATGTGTAGGGACGATTTCTCTTGCGAGGACCTGAAACCTGTGCTTCAGGTGATTGACTTGAAGTTGGTGCAGTCACAGCAGAATTCCAACGCGGAGAGGTATAGGCTTGTGCTTTCTGATGGCTCTCATTTCCAGCAAAGCATGCTTGCTACTCAGATGAACGAGTTGGTTCGCGCTGGGCGATTGCAGAAGGGCTCTATTGTTAGGCTCACTCAGTTTATCTGTAATGTTGTTCAGAGTCGCAAGATTATCATCATTATTGAGATGGATATGGTCCTCGACAGATGTGATCCGATTGGAGATCCGGTCGCTTACCCAAGAGCTGTACCTGCTCCATCTTCCATTGGTCAGTCTCGACCTAATGTAGCTAGGCCATCTCTGGATCATTCACAAATTAATCTCACAGCCAATGGTGCAAGATATGGTGCTGCAAATGCCCCTCCTCCATTGCCTAAAGCAGAGCCTAGAGCTACAACTACTTTACCTAATTCAGAGCCATTCAATGGGTCCTATAGTGAACAGAACATGGGATTCCGCAATCCTCGACCAGAGACTCTAAGACCCCCACAAAATGTCTATATTCGTCCACCACAGTCTATGCATAGACAGCCTTCTCCAATTTACAATAACAGGGGACCAACAGGCAGAACTGAAGCTTTCCCAAGGATAATTCCAATATCTGCATTGAATCCTTACTCAAGCATGTGGACAATCAAGGCTAGAGTTACGGCAAAGGCAAGTCTCAGACAGTACGTAAATGCCAGAGGTGATGGTAAAGTATTTTCTTTTGATCTTCTTGATTCTGAAGGTGGAGAAATTCGTGCAACTTGCTTTAATGCAGTGGCTGAACAGTTCTATCATCAAATTGAAATTGGTAAAGTATATCTGATTTCAAAGGGAAATCTAAAGCCAGCTCAAAAGAATTTTAATCATCTTCCTAATGATCAAGAACTAACCCTTGATATTACATCCAGCATACAGCCATGTGATGATGACAAGTCAATTCCAATGCGTATTTTTAAGTTCCGTCCTATACGTGATGTTGAAAGCATGGAAAATTCGAGTGTTGTGGATGTGATTGGTGTGGTATTTTCTATTAGTCCTACAACTTCAATCATGAAAAAGAATGGTACTGAAACTCAGAAGAGAGCCCTCCAGTTGAAGGACATGTCTGGTTGCAGTGTTGAGTTAACCCTTTGGGGAAATTTTTGTCATGAAGAAGGACAACAATTGCAGAATACGTGTGACTCAGGTGCATTTCCAGTTTTGGCTGTGAAAGCTGCCAGGGTACATGAATTCAATGGGAAGGCCCTTGGAACCATATCCAACAGTCAGCTATTTATAGAGCCTGATTATCCAGAGGCTTACAGGTTGAAAGAATGGTTTGACAGGGAAGGGAGGAATGCCCCAACTGTTTCTCTTTCCCGAGAATCATTCAATGTCGGTAAGACTGACATCAGGAAGACTATATCTCAGATTAAAGATGAGAATTTAGGGACTTCTGAGAAGCCTGATTGGATTAGCATCTGTGCAAGTGTTTCATTCATTAAGGCCGATTCTTTCTGCTATACAGGCTGTCCCATCATGATAGGGGATAAGAAATGTGCAAAAAAAGTGTCCAATAATGGAGATGGGAAATGGCGGTGTGATAGATGTGACCAGTATGTTGATGCATGTGAATATAGGTATTTACTGCAGCTCCAAATACAGGACCACACTGGGCTGACGTGGGTCACCGCATTTCAGGAGTGTGGTGAGGAGATAATGGGCTTACCTGCCAAAGATCTTTATTATATGAAATATGAAGAGCAGGATGACGAAAGATTTGCACAAGTTATCCGTAAGGTTCTTTTTACTAAATACCTATTCAAGCTAAAAGTTAAGGAAGAGACATATGGTGATGAACAGCGTGTGAAGTCAACAGTGGTGAAAGCAGAGAAGGTGGACTTTTCATCTGAATCAAGATTTCTTTTGGATCTGATTGGCAAGCTTAAAGCTGAGAAGGTAGAAGGCATGACTCCTAACTCTGTAGTCAGTAATGCTGGACCGCAGAATGTTGGAACTGGCCTGGTTGTGGCACCAGCTTATAATTCTATACAGAGCAACAGTGGTGCAAGTAGAGAATATGGAACACCGGCAAATCAAGTTGGTCAGTATGACCACCACTATAGGACTTCTTTTGCTTCAGCTGGGTCTTCTAGTTCATATATGTCTTGTAGCAATTGTGGAGGCTCTGGCCATAGCTCTATGCATTGCCCAAACATTACAAGTGCACCTCATCAGTCCATGGGGGGAGGGACCTTTTCAAATAGGGCATCTTCAGGGGTAGGTGGTGGTGGTGTTGGGTCTGGTGAATGCTTTAAATGTCATCAAACTGGTCACTGGGCAAGAGACTGTCCTGGTCTCAATGCAGCAGCCCCTTCAGGTTATGGAAGTAGTGTTGTTCATGGAGGACATGGGTTTGCTCAACGGCAGCAGCTTGGCGGATTTTAA 2529 0.4357 MAANLTSGAIMTMCRDDFSCEDLKPVLQVIDLKLVQSQQNSNAERYRLVLSDGSHFQQSMLATQMNELVRAGRLQKGSIVRLTQFICNVVQSRKIIIIIEMDMVLDRCDPIGDPVAYPRAVPAPSSIGQSRPNVARPSLDHSQINLTANGARYGAANAPPPLPKAEPRATTTLPNSEPFNGSYSEQNMGFRNPRPETLRPPQNVYIRPPQSMHRQPSPIYNNRGPTGRTEAFPRIIPISALNPYSSMWTIKARVTAKASLRQYVNARGDGKVFSFDLLDSEGGEIRATCFNAVAEQFYHQIEIGKVYLISKGNLKPAQKNFNHLPNDQELTLDITSSIQPCDDDKSIPMRIFKFRPIRDVESMENSSVVDVIGVVFSISPTTSIMKKNGTETQKRALQLKDMSGCSVELTLWGNFCHEEGQQLQNTCDSGAFPVLAVKAARVHEFNGKALGTISNSQLFIEPDYPEAYRLKEWFDREGRNAPTVSLSRESFNVGKTDIRKTISQIKDENLGTSEKPDWISICASVSFIKADSFCYTGCPIMIGDKKCAKKVSNNGDGKWRCDRCDQYVDACEYRYLLQLQIQDHTGLTWVTAFQECGEEIMGLPAKDLYYMKYEEQDDERFAQVIRKVLFTKYLFKLKVKEETYGDEQRVKSTVVKAEKVDFSSESRFLLDLIGKLKAEKVEGMTPNSVVSNAGPQNVGTGLVVAPAYNSIQSNSGASREYGTPANQVGQYDHHYRTSFASAGSSSSYMSCSNCGGSGHSSMHCPNITSAPHQSMGGGTFSNRASSGVGGGGVGSGECFKCHQTGHWARDCPGLNAAAPSGYGSSVVHGGHGFAQRQQLGGF 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1147 842 FunFam Replication protein A subunit 234 343 - -
Mibi12g1147 842 SUPERFAMILY Nucleic acid-binding proteins 352 481 IPR012340 -
Mibi12g1147 842 Gene3D - 234 344 IPR012340 -
Mibi12g1147 842 ProSiteProfiles Zinc finger CCHC-type profile. 751 766 IPR001878 GO:0003676|GO:0008270
Mibi12g1147 842 Pfam Replication protein A OB domain 357 460 IPR031657 -
Mibi12g1147 842 Gene3D - 346 485 IPR012340 -
Mibi12g1147 842 CDD RPA1_DBD_B 368 475 - -
Mibi12g1147 842 Pfam Replication factor-A C terminal domain 518 669 IPR013955 -
Mibi12g1147 842 ProSiteProfiles Zinc finger CCHC-type profile. 798 812 IPR001878 GO:0003676|GO:0008270
Mibi12g1147 842 CDD RPA1_DBD_C 502 675 IPR013955 -
Mibi12g1147 842 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Mibi12g1147 842 SUPERFAMILY Retrovirus zinc finger-like domains 785 815 IPR036875 GO:0003676|GO:0008270
Mibi12g1147 842 SMART c2hcfinal6 797 813 IPR001878 GO:0003676|GO:0008270
Mibi12g1147 842 SMART c2hcfinal6 750 766 IPR001878 GO:0003676|GO:0008270
Mibi12g1147 842 Gene3D - 743 826 - -
Mibi12g1147 842 SUPERFAMILY Nucleic acid-binding proteins 499 676 IPR012340 -
Mibi12g1147 842 MobiDBLite consensus disorder prediction 153 181 - -
Mibi12g1147 842 Pfam OB-fold nucleic acid binding domain 248 334 IPR004365 GO:0003676
Mibi12g1147 842 FunFam Replication protein A subunit 4 118 - -
Mibi12g1147 842 Gene3D - 486 676 IPR012340 -
Mibi12g1147 842 FunFam Replication protein A subunit 346 484 - -
Mibi12g1147 842 Pfam Zinc knuckle 797 812 IPR001878 GO:0003676|GO:0008270
Mibi12g1147 842 SUPERFAMILY Retrovirus zinc finger-like domains 742 813 IPR036875 GO:0003676|GO:0008270
Mibi12g1147 842 PANTHER REPLICATION FACTOR A 1, RFA1 248 654 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mibi12g1147 842 SUPERFAMILY Nucleic acid-binding proteins 235 346 IPR012340 -
Mibi12g1147 842 FunFam Replication protein A subunit 485 676 - -
Mibi12g1147 842 Gene3D - 3 118 IPR012340 -
Mibi12g1147 842 CDD RPA1_DBD_A 237 340 - -
Mibi12g1147 842 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mibi12g1147 842 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mibi12g1147 842 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 210 673 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1147 Mibi-ChrMibi12 26758994 26762434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1147 1 779 Core DNA Replication Machinery Family AT5G45400 49.823 0.0 833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1147 12 26758994 26762434 Mibi12g1147 12 26758994 26762434 ECH