Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1090 ATGGTGGAAAGAAGACTTCCTTTATCTAAGGAAGCTAGACATGGGCTAGAACTTTTGAAGCGTAAACGGCTTCAACGGGCAAAACTCATTACTGCCCCTGAAATAACTGTTGCTAGCACAATGACTAGAAGCGGAGGAGATGCTTTAAGAGCTTCATCTTCATGTGGTGTCAGATTGCATGGCAATGCGGATATTTTCTCCAAGCGGAAGGTGGATAAGTTTGAGACAAGTGATCTTGAATGGACTGAAAAAATTCCAGAATGTCCGGTGTATTCTCCAACGAAGGAGGAATTTGAGGATCCTCTGGTTTACTTGCAAAAGATAGCTCCAGAAGCTTCAAAATATGGCATATGCAAGATTATTTCACCCCTGAGTGCGTCTGTTCCTGCTGGAGTTGTTTTAATGAAGGAGAAAGCAGGGTTCAAGTTTACAACTAGAGTACAGCCTCTTAGGCTTGCTGAGTGGGACACTGAAGATAAAGTCACTTTTTTCATGAGTGGAAGCAATTATACATTCCGTGATTTTGAGAAAATGGCGAATAGAGTTTTTGCACATAGATATTCTAGTGCTGGATGTCTTCCTACCACATTTTTGGAAAAAGAGTTTTGGCATGAAATTGCTTGTGGACAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGTAGTGCTTTTTCCTCTTCTCCTACTGATCAGCTTGGGAACAGCAAATGGAATTTAAAGAAAGTTTCACGGCTGCCCAAGTCCATTTTGCGCCTCCTGGAAACATCAATTCCGGGAGTAACAGAACCTATGCTGTACATTGGAATGCTCTTCAGTATGTTTGCTTGGCATGTGGAAGATCATTATTTGTACAGTATAAATTATCATCACTGTGGGGCAGCAAAAACTTGGTATGGCATTCCAGGTCACGCAGCATTGGATTTTGAAAGGGTGGTGAGAGAGCATGTGTACTCAAATGATATTCTTTCTAGTGATGGGGAGGATGGAGCTTTTGATGTTCTTCTGGGGAAAACTACTCTGTTTCCTCCAAATATTTTGTTGGATAATGAAGTCCCTGTTTATAAGGCTGTTCAAAAGCCAGGAGAGTTTGTCATAACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAACTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCTAGCCAGCGATATGCACTTCTTAACAGGATGCCTCTGCTGCCTCATGAAGAACTTCTGTGCAAAGAAGCAATGCTTCTTCATACAAACTTGGAACTTGAAGATTCAGACTTTCCCTCTGCAGATCTAATGGCTCATAATTGCATAAAGATTTCTTTTGTGAATCTAATGCGCTTTCAGCATTGTGCACGCTGGCTGTTAATGAAATCGAGGGTTTGTTCGAGTGTTTTTACACATTCCCACAGCACAATTCTCTGTAGCCTCTGCAAACGTGATTGTTATGCTGCATATGTAGACTGCATGTGTCACAAGCATGCAGTGTGCCTTCGCCATGATATTGAAGCTCTTGGCTTCACGTGTGGGAGCGGACACACTCTTTATGTGAGGGAGGATATCAGTGATCTCGAAGCTGCAGCCAAGAGGTTTGAGCAGGGAGATGGAATCGTGGATGAGATTCTTAAGCAAACCAAGGGTGATAATAACATGTATTCATATCCTTTGTCAGATATGTTCCAGAGAGCTCGAGCAAAGGGATATACTCCTTATTGCGATATAGAATTTGATCCTGTTATTGAACATTATTCAATACCAGATCAGGCAACAAGTAATCCAGAGAATAATTTACAAAGCCAATTTGTTTCGAGGCACTGCCCAGATCTTAATCCAGAAGTCTGCGAGGCTTCTTTTAATTCTGTTGCATCCACCCTGTGTTCTCTTTCAGAACCTATTGATAGGTCTTCTGTTCCAAAAAATGTCGATGGGCATGCTTATTTTACCTCAGACTCTATTGATTCTGAAGAATGTTGCGAAGGAGTATCGAATGGCGCGTGCCAATCTTTACTATCCTCAACGCGCCATCACGAAATCTCAAGTAAACCACAGCGCAATCTAGATGAATTAGAGATGACGCCCAATGTGGATAATGAGGATAACGATTCTGATTCAGAGATATTTAGGGTAAAGCGGCCATCTTCTCTGAAGGCAGAGAAGAGAAATTTGAATTCCATGTCTTCCAAGCATTCGGACCCACAGGGGCTTAAGCGATTGAAGAAAGAAAACGAAGGAAGTAGCCCGGCACAGCCAATGGATTGCAACGGAAGCAATGATTCAAGTAACAAATTAAGTGACCCGATGAGGCGGAAAGTGGAGATTGAAAGATCGGCGAAGGACAAATTTGCAGGCGGAAATGGCATTCCCATCTCTGTAAGGTACAAGAAGCTGGACAACGATGCAGTTAGTAGGGAGCAGCGAGATCAGCACAGGAAATACAGGTTCCAGCAGGCAGCTAGGGAACGACCTCCTCCCTTTGAGATGGGGCCCAAGCGCATTAAAGTTCGAGGCCCTTCGTTCTTGAGCTTAGAGGGTCCTCCTGGTTTTGCCTCTAAATGGTGA 2589 0.4299 MVERRLPLSKEARHGLELLKRKRLQRAKLITAPEITVASTMTRSGGDALRASSSCGVRLHGNADIFSKRKVDKFETSDLEWTEKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGSNYTFRDFEKMANRVFAHRYSSAGCLPTTFLEKEFWHEIACGQMETVEYACDVDGSAFSSSPTDQLGNSKWNLKKVSRLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGAAKTWYGIPGHAALDFERVVREHVYSNDILSSDGEDGAFDVLLGKTTLFPPNILLDNEVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLNRMPLLPHEELLCKEAMLLHTNLELEDSDFPSADLMAHNCIKISFVNLMRFQHCARWLLMKSRVCSSVFTHSHSTILCSLCKRDCYAAYVDCMCHKHAVCLRHDIEALGFTCGSGHTLYVREDISDLEAAAKRFEQGDGIVDEILKQTKGDNNMYSYPLSDMFQRARAKGYTPYCDIEFDPVIEHYSIPDQATSNPENNLQSQFVSRHCPDLNPEVCEASFNSVASTLCSLSEPIDRSSVPKNVDGHAYFTSDSIDSEECCEGVSNGACQSLLSSTRHHEISSKPQRNLDELEMTPNVDNEDNDSDSEIFRVKRPSSLKAEKRNLNSMSSKHSDPQGLKRLKKENEGSSPAQPMDCNGSNDSSNKLSDPMRRKVEIERSAKDKFAGGNGIPISVRYKKLDNDAVSREQRDQHRKYRFQQAARERPPPFEMGPKRIKVRGPSFLSLEGPPGFASKW 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1090 862 FunFam Lysine-specific demethylase isoform A 83 432 - -
Mibi12g1090 862 SUPERFAMILY Clavaminate synthase-like 225 421 - -
Mibi12g1090 862 SMART cupin_9 232 405 IPR003347 -
Mibi12g1090 862 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Mibi12g1090 862 SMART JmjN_1 87 128 IPR003349 -
Mibi12g1090 862 MobiDBLite consensus disorder prediction 684 862 - -
Mibi12g1090 862 Pfam jmjN domain 89 121 IPR003349 -
Mibi12g1090 862 MobiDBLite consensus disorder prediction 806 827 - -
Mibi12g1090 862 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Mibi12g1090 862 MobiDBLite consensus disorder prediction 773 789 - -
Mibi12g1090 862 Gene3D Cupin 81 410 - -
Mibi12g1090 862 MobiDBLite consensus disorder prediction 757 772 - -
Mibi12g1090 862 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Mibi12g1090 862 MobiDBLite consensus disorder prediction 711 735 - -
Mibi12g1090 862 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Mibi12g1090 862 PANTHER LYSINE-SPECIFIC DEMETHYLASE 80 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1090 Mibi-ChrMibi12 26080262 26086102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1090 85 542 JUMONJI Transcription Factor Family AT2G34880 32.458 2.61e-64 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mibi12g1090 JmjC 9.9e-39 CL0029