Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1083 ATGAGCTCTTTAAGGTTGGTTTTGGAGAGGTTTTCTTGGTGCCTTGAATTGTGTATTAATGGGTGTGTATTCATGTCGATAAGATGTGGGGTTGAGTTAGCTTTGCTCCACAGCAAAGTGCTCTCCTGTAAACAAAGGTTGTTTAGATTGTACTATGCGGCTTCTTCGGCAGTGATGTTGGAAGACCATGTGTTTGATGAAAGTCCTAGAGTAGATTATGCCAATGAAATGGTCAATTTTGGAGGAAATGGTTTGAGAGCTGCAAGTCTTCAAAGAAAGGGCAGTTTATTTCCTTTAGTGGTATGGGTGATTAAAACCTCTAATTGGGAGAGTGAACTTGCTAGAGATAGAATGTTCTGGAGAGCTGTAAGGCGGTATGGATTTTCTCATTCAATCACTTCCTTTAAAATTATTATTCACATATTTGCATTGGAAGGAATGCGTATGGAAGTATTTTCTTTGCTCAAAGATATTGTTGGATTCTATAGGAAGGCCAAGTTTGACACATTCAAATTGTTCCCAACTTTGTTAGATTCACCTCAGCATGTGGACCGATCAATTGTTGTGTATGACATATTAATTAAAGTACTTGCATCCTATTCCATGCTTGATGATGCATTTGATGTGTTCATGAGAGTTAAGCATCTGGGGTTTGAACCTGACATATTGTCGTGCAATTTCTTGTTGAAATGCTTGGTAGAAACAAACAGGGTGGAGTTGGTTGAAAAATTATATGCAGAGCTAAAAATCTCAGGCCCATCACCAAATATCTACACCCATACAATTATGATGAACTTCTACTGCAGAGGAGATTGTGGGCAGGATGTAGATATTAACCAAGCTACAGGGATTTTTGAAGAAATATTAAGGAGTGGTGAAAACCCAACTGTTGTCACATTTAGTATTTATATTCGTGGACTTTGTAAACTTGGTTCTGTTGCTGCTGCTCTGCAATTCATTCGTAAATGCAGGTATACAAACCAGCCACTCAATAGCTATTGTTTCAATTCTGTTATTTACGAATTTTGTCGAAAGGGCGCAATTCATGAAGCTTTGCAAGTCTTGCAAGAAATGCGAAGCTCAGGAGTATTGCCTGATGTTTGTAGCTACAGTATTTTAATCCATGCTTTTTGTAAAAATGGGGATATAGAGAAAGGTTTTGACTTGATTGAGGAAATGGAACTTTATAATATAAAACCATCCATAGTTAGTTACACCTCCCTTATCTATGGTCTATGCAAGAGTAAGCTGATGGAATTTTCAATGTGTGTGTTTCGGAATATCGGTGCTTCTGGATACAAATATGACCAGGCTGCTTATGAAACTATGATCAATGGATTTTGCTGTCAAGGTGATATAGATTCTGCCATAAAGCTTTTGGAGGAGATGATTACAAATGATCTAGCTCCTACTTATTTTGGTTTCCAGAGTATAATTGGAGGGTTCCACAAACTGGGTCTCTTAGACAAGGCATTGGAAGTTCTAAATTCCATGCTACAAGGCGGTGTCTTGCCAAATACCATCACTTGCAATTTTATTATAGATGGACTCTGCAGAGAAGGCCGTTTTATGGAAGCCTTGACTCTACTGGAAGAGTTCCAAGACCAAGGAATTGACCTAAACTCTCTTTCATATAACGCTGTCATCTACAGGCTTTGCAGGGGAGGACATCTAGATAGGGCTTGGGAGCTCCTTCCAAGAATGATGAAAAGGAATGTACTTCCAGAAGTTGTTAATTATACAACTCTCATAGATGCTTTTGCCAAACAATCTAATCTAAAGAAGGCCTTATGGTTATACACAAGAATGCTGAAAGTTGGAGTTACTCCCAACACCATCACTTATACAGTCCTTATTAACATCTTTTGTCGTTTGAGCAAAATGCATGAAGCATTTGGTTTTTACAAGAAAATGGTAGAAGATGGTTTGAATCCAGATCGGATTTCATATACATCGTTAATAGGAGGTTTTTGTAGAACTGGAGATATGAGAAAGGCCTGGGTAGTATTCCAAGAAATGTTGAGGAAAGAACATTTGCCTGATGTGTTTACCTACACATGTTTGATAGATGGATTTTGCAAATTAAACCGCATAGATATAGCCTCTTTTCTGTTTGATGAAATGAACAGAAAAGAAGTTACTCCTAGTGTTGTCACTTACACTGTTCTCATTGCTTGGTACCGTAAACATGGATATGCAGATCAGGCACATAGATTATATCGTGAAATGAGGGTAAAGGGCATTTCACCGGATGATATAACTCATAAGGTTCTTTTGAAAGGCAGCAGAGCAGAAGCCAAGGGAGAAAATGATCAGCATTTGAAGTTAAATCTTCACTTACCTAGATGTTATTCTTCTTCAGGAAAGCAAGCTACATCTCGCAATTTGGGGTCTTATCAGCAGCCTGAACCTCAACAGTTGGTGAGACGACACAACAGTAGTGAGGGCAATGTTCACTCAGTTTGCTGGGTTTAGGAGGAAATCGTCGTTTTTGGCAAAAACCAGTTTCGGGTCTGGACGTCATCTCTCAGCCCCGAAAAGAAAAGAGGCAACTGGATTTCCTTCTTCCCTTTATTACCGCCGACGAACCATCATCTTCCTTCTCCTGTCCGTACAATCCCTCCCAATCTGAAAATCCATACTCTCTCCCTTTCTCTTATCTTCAAACTCTCTCACTTTTCTCCACTCCACATCTCTCCTTCCAAACTAGGGTTTCAACTTTCCCAACAATACAATGGCTTCCATTCACTCAATTCCATAGTCTCACCCCCCAATCTTACATATATACACCTCTTTCACAATCAAATTCCTGATATGGATGGAGAGAATAAGATCAGCGGAGAAGGCGGCGGCGGCGATGTCCAGATGGCGGCGGCGCCGATTCCTAATGCGAACGGTCCGCCGCCGTTCCTTAGTAAGACGTATGATATGGTGGATGACGCGTCCTCTGATGCGATCGTGTCTTGGAGCCCAACCAATAACAGCTTTGTTGTTTGGAATCCACCTGAGTTTGCCAGAGATCTCTTGCCCAAGTACTTCAAGCACAATAATTTCTCCAGCTTTGTCAGGCAGTTGAACACTTATGGTTTTCGGAAGGTGGATCCAGATCGATGGGAGTTTGCAAATGAGGGCTTTTTAAGGGGTCAGAAGCACTTGCTTAAGAGTATCACTCGACGAAAACCTGCTCATGGCCATGGTAATCAACAAACACAGAACACACATGGACAGAATTCATCAGTAGCTGCATGTGTAGAAGTTGGGAAATTTGGACTTGAAGAAGAGGTTGAGAGGCTTAAGAGAGATAAGAATGTGCTCATGCAGGAGCTGGTGAGGTTGAGGCAGCAGCAACAGACCACTGATAACCAGCTGCAGACAATGGTTCAGCGCCTACAGGGAATGGAACAACGACAACAGCAAATGATGTCGTTTCTTGCCAAGGCTGTCCAGAGCCCTGGATTCTTTGCTCAATTTGTACAACAGCAGAATGAGAGCAATAGACGCATAACTGAAGCCAACAAAAAACGGCGGCTTAAGCAGGAAGGAATTGCTGAAACAGAATGTACTACTGCCTCTGATGGACAAATTGTGAAGTATCAACCTCTGATGAATGAAGCGGCACAAGCTATGCTAAGGAAGATAATGGAAGTGGATACTTCAAGGCTTGAATCTTTTAATAACAACCAAGATAACTACATGATTGGGGATGGTTCATCATCATCTAGTGCAATGGACAGTAGTAGCTCTTCAAGCTGGAATTCTGGAGTTACACTTCAAGAGGTCCCTCCAACTTCAGTGCATTCTTCTCACATTCCAGCTGTGTCGGGAACTTCTGGACCCTCTGCTGATAAATCGAAAATCCTTTCCACAAAAACTACATCTGCTGTCTCTGCTCCTCAGGCGGATATCATGATGCCTGAGATTTCGCCCATACCAGAGATGGTAACCCAAAGTATTCCTGGTGTTCCTGAAGAAAATTATGTGAGACCTGCTATGGACAACATGGATCCTACTTCATTGGGAATGAATGGGTCATTGCCCACTGATGTTGGCAGTTTTTCTCCTGATGCTGACATTGATGATTTATTACGCAATCCTTCCTTCTGGGATGATTTTCTTCTGCAAAGTCCATTGCCTGAGGATGTCGAGATTAATGCCGCGGAAGCAATGTCCAATGAGGTGCAGCCCATGGAAGAAGGGTGGGACAAAACTGAACGTATGAGCCAACTTACAGAGCAGATGGGTCTTCTTTCTTCTGATCCAAGAGCAGGTTGA 4272 0.4157 MSSLRLVLERFSWCLELCINGCVFMSIRCGVELALLHSKVLSCKQRLFRLYYAASSAVMLEDHVFDESPRVDYANEMVNFGGNGLRAASLQRKGSLFPLVVWVIKTSNWESELARDRMFWRAVRRYGFSHSITSFKIIIHIFALEGMRMEVFSLLKDIVGFYRKAKFDTFKLFPTLLDSPQHVDRSIVVYDILIKVLASYSMLDDAFDVFMRVKHLGFEPDILSCNFLLKCLVETNRVELVEKLYAELKISGPSPNIYTHTIMMNFYCRGDCGQDVDINQATGIFEEILRSGENPTVVTFSIYIRGLCKLGSVAAALQFIRKCRYTNQPLNSYCFNSVIYEFCRKGAIHEALQVLQEMRSSGVLPDVCSYSILIHAFCKNGDIEKGFDLIEEMELYNIKPSIVSYTSLIYGLCKSKLMEFSMCVFRNIGASGYKYDQAAYETMINGFCCQGDIDSAIKLLEEMITNDLAPTYFGFQSIIGGFHKLGLLDKALEVLNSMLQGGVLPNTITCNFIIDGLCREGRFMEALTLLEEFQDQGIDLNSLSYNAVIYRLCRGGHLDRAWELLPRMMKRNVLPEVVNYTTLIDAFAKQSNLKKALWLYTRMLKVGVTPNTITYTVLINIFCRLSKMHEAFGFYKKMVEDGLNPDRISYTSLIGGFCRTGDMRKAWVVFQEMLRKEHLPDVFTYTCLIDGFCKLNRIDIASFLFDEMNRKEVTPSVVTYTVLIAWYRKHGYADQAHRLYREMRVKGISPDDITHKVLLKGSRAEAKGENDQHLKLNLHLPRCYSSSGKQATSRNLGSYQQPEPQQLVRRHNSSEGNVHSVCWVXEEIVVFGKNQFRVWTSSLSPEKKRGNWISFFPLLPPTNHHLPSPVRTIPPNLKIHTLSLSLIFKLSHFSPLHISPSKLGFQLSQQYNGFHSLNSIVSPPNLTYIHLFHNQIPDMDGENKISGEGGGGDVQMAAAPIPNANGPPPFLSKTYDMVDDASSDAIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGHGNQQTQNTHGQNSSVAACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNRRITEANKKRRLKQEGIAETECTTASDGQIVKYQPLMNEAAQAMLRKIMEVDTSRLESFNNNQDNYMIGDGSSSSSAMDSSSSSSWNSGVTLQEVPPTSVHSSHIPAVSGTSGPSADKSKILSTKTTSAVSAPQADIMMPEISPIPEMVTQSIPGVPEENYVRPAMDNMDPTSLGMNGSLPTDVGSFSPDADIDDLLRNPSFWDDFLLQSPLPEDVEINAAEAMSNEVQPMEEGWDKTERMSQLTEQMGLLSSDPRAG 1423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1083 1423 SUPERFAMILY TPR-like 452 676 IPR011990 GO:0005515
Mibi12g1083 1423 Pfam PPR repeat family 365 414 IPR002885 -
Mibi12g1083 1423 Pfam PPR repeat family 220 269 IPR002885 -
Mibi12g1083 1423 Pfam PPR repeat family 645 694 IPR002885 -
Mibi12g1083 1423 Pfam PPR repeat family 715 761 IPR002885 -
Mibi12g1083 1423 Pfam PPR repeat family 575 624 IPR002885 -
Mibi12g1083 1423 Pfam PPR repeat family 505 554 IPR002885 -
Mibi12g1083 1423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Mibi12g1083 1423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Mibi12g1083 1423 MobiDBLite consensus disorder prediction 785 806 - -
Mibi12g1083 1423 MobiDBLite consensus disorder prediction 1225 1285 - -
Mibi12g1083 1423 FunFam Heat shock transcription factor 1 963 1060 - -
Mibi12g1083 1423 PANTHER ATPASE EXPRESSION PROTEIN 3 113 541 - -
Mibi12g1083 1423 SMART hsfneu3 966 1059 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1083 1423 Gene3D Tetratricopeptide repeat domain 111 274 IPR011990 GO:0005515
Mibi12g1083 1423 PRINTS Heat shock factor (HSF) domain signature 1021 1033 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1083 1423 PRINTS Heat shock factor (HSF) domain signature 970 993 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1083 1423 PRINTS Heat shock factor (HSF) domain signature 1008 1020 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1083 1423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Mibi12g1083 1423 Pfam HSF-type DNA-binding 970 1059 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1083 1423 Gene3D - 963 1060 IPR036388 -
Mibi12g1083 1423 ProSitePatterns HSF-type DNA-binding domain signature. 1009 1033 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi12g1083 1423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Mibi12g1083 1423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Mibi12g1083 1423 MobiDBLite consensus disorder prediction 940 963 - -
Mibi12g1083 1423 MobiDBLite consensus disorder prediction 1062 1076 - -
Mibi12g1083 1423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Mibi12g1083 1423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Mibi12g1083 1423 MobiDBLite consensus disorder prediction 1389 1423 - -
Mibi12g1083 1423 MobiDBLite consensus disorder prediction 1056 1076 - -
Mibi12g1083 1423 Pfam PPR repeat 432 463 IPR002885 -
Mibi12g1083 1423 Pfam PPR repeat 330 359 IPR002885 -
Mibi12g1083 1423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Mibi12g1083 1423 Coils Coil 1088 1115 - -
Mibi12g1083 1423 MobiDBLite consensus disorder prediction 1323 1352 - -
Mibi12g1083 1423 Pfam PPR repeat 188 218 IPR002885 -
Mibi12g1083 1423 Pfam PPR repeat 477 503 IPR002885 -
Mibi12g1083 1423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Mibi12g1083 1423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Mibi12g1083 1423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 716 750 IPR002885 -
Mibi12g1083 1423 SUPERFAMILY "Winged helix" DNA-binding domain 965 1059 IPR036390 -
Mibi12g1083 1423 Gene3D Tetratricopeptide repeat domain 639 711 IPR011990 GO:0005515
Mibi12g1083 1423 Gene3D Tetratricopeptide repeat domain 394 465 IPR011990 GO:0005515
Mibi12g1083 1423 Gene3D Tetratricopeptide repeat domain 536 638 IPR011990 GO:0005515
Mibi12g1083 1423 Gene3D Tetratricopeptide repeat domain 466 535 IPR011990 GO:0005515
Mibi12g1083 1423 Gene3D Tetratricopeptide repeat domain 712 776 IPR011990 GO:0005515
Mibi12g1083 1423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Mibi12g1083 1423 TIGRFAM PPR: pentatricopeptide repeat domain 369 401 IPR002885 -
Mibi12g1083 1423 TIGRFAM PPR: pentatricopeptide repeat domain 439 471 IPR002885 -
Mibi12g1083 1423 TIGRFAM PPR: pentatricopeptide repeat domain 188 222 IPR002885 -
Mibi12g1083 1423 TIGRFAM PPR: pentatricopeptide repeat domain 683 716 IPR002885 -
Mibi12g1083 1423 TIGRFAM PPR: pentatricopeptide repeat domain 580 612 IPR002885 -
Mibi12g1083 1423 TIGRFAM PPR: pentatricopeptide repeat domain 613 646 IPR002885 -
Mibi12g1083 1423 TIGRFAM PPR: pentatricopeptide repeat domain 333 367 IPR002885 -
Mibi12g1083 1423 TIGRFAM PPR: pentatricopeptide repeat domain 544 575 IPR002885 -
Mibi12g1083 1423 TIGRFAM PPR: pentatricopeptide repeat domain 718 751 IPR002885 -
Mibi12g1083 1423 TIGRFAM PPR: pentatricopeptide repeat domain 648 682 IPR002885 -
Mibi12g1083 1423 TIGRFAM PPR: pentatricopeptide repeat domain 508 541 IPR002885 -
Mibi12g1083 1423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Mibi12g1083 1423 Gene3D Tetratricopeptide repeat domain 275 393 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1083 Mibi-ChrMibi12 25964550 25975419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1083 939 1417 HSF AT1G32330 52.800 1.40e-159 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mibi12g1083 HSF_DNA-bind 3.1e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1083 12 25964550 25975419 Mibi12g1083 12 25964550 25975419 ECH