Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1079 ATGGAGGTGGAAATCTCAAATTACGCATTCGTCCCCAAATCTGAATCGGAGGATCCTTCCAATTCTGAGGTTGATCATTCGTTTGAAGCATTAAGCATTCGCAAGGAGGAATTGGAGTTGAAGAATGAAGAAGAAGGGAAGGAGAGGGAAGAGAGTGATAGGGATGATAGTGTTTTTAGGAGACTGGATAAGCGAATAATGAAGGATGCAGGGGAATCGGAATTGTCAGAGGAACAGCTGGGTGTTAACGATCAATTGCAAGCAGATGAGATACAAATAAACATTGAAGTTTCAGATGAAATTGGCGTCACAGCTAAGCTGAATTCTTCTAATGAACATAAGATTGCAAGCAACAATGCTGACGACTTCTCATACTCTTTCAAAGTCCAGTATCTTCCACCTATTATTCTGACATGTTTATTACCAAAGTCATACCCAAGCCATCAACCACCACATTTTATAATTTCGGTAAAGTGGTTGGACTCCACAAGAATTTCTAGTCTATGCTCCATGTTAGATTCAATATGGACTGAGCAGAAAGGGCAGGAAGTTATATACCAGTGGGTAGAATGGTTGCATGGTTTTTCTCTATCTCATCTGGGATTCGATAAAAAGATTACTCTTGGTCCTTATGGCATGAAACATATTAGAGATGAGCGTGCGGTCTCAGGAATTTTGTCCCTAGATTCTGATATTCCCTTATTACGAAAGTTTGCTCAGTTACCATGTCAGCATGTTTTTTGCTTAAAATGCTTGCAGACCTTTTCTCAGATCCATGTAAAAGAAGGAACCCTCAATAATCTTCAATGTCTCAATTCAAAATGTGATATTATGATCCCACCTTATCTATTAAAATGCTTGCTTGATGATAAAGAGTATCAGCGCTGGGATTCCTTGATGTTGGAGAAAACAATTGCATCAATGTCTGATATTGCTTATTGCCCAAGATGTGACGCACCTTGTATAGAAGATGAAGAACAGCATGCTCAATGCTCTCAATGCTTCTTTAGTTTTTGTACCCTTTGCAGGGAGCGACGCCATGTGGGCATAGCATGCATGACCCTGGACATGAAGTTTCAAATTTTGCAAGAGCGCCAGACTTCATCTCAGTTAAAGGAAGCTCAGAGGCTGAGGGAACGTGAAAAGATAAATGAGATGCTCAGTGTCAAAGAAATTCATCGTGATTCTAAGCTGTGTCCTACTTGTAAAATAGCTATTTCCCGAACTGAAGGTTGCAATAAAATGTTGTGTGGTAATTGTGGCCAATATTTCTGTTACCGTTGCAACAAAGCACTTGATCAATCGGATCCTTATGAGCATTTCAGATACAAGCAGAACTCCTTTTTGAACGCCGCCAACGATGTCCTAATTGTCGTCAATTTAATGCAAAGGTTGATAACAATAACCACATGTTTTGCTGGGCATGCCAGAGCCATTATTGCTACTCTTGCAAGCAGATTGTTAGGCGTAGTGCGCAGCATTATGGACCCAAAGGTTGCAAACAGCACTCCGATGATTAGTAAGGAGATCAATTTGTTGCAAGGGTCTCACAGTCTTTCAATCTGGAAGCCACAGAGTCTTGAAACTGCTGTAATATGTCATTATGTTGTGGGTTGA 1617 0.4045 MEVEISNYAFVPKSESEDPSNSEVDHSFEALSIRKEELELKNEEEGKEREESDRDDSVFRRLDKRIMKDAGESELSEEQLGVNDQLQADEIQINIEVSDEIGVTAKLNSSNEHKIASNNADDFSYSFKVQYLPPIILTCLLPKSYPSHQPPHFIISVKWLDSTRISSLCSMLDSIWTEQKGQEVIYQWVEWLHGFSLSHLGFDKKITLGPYGMKHIRDERAVSGILSLDSDIPLLRKFAQLPCQHVFCLKCLQTFSQIHVKEGTLNNLQCLNSKCDIMIPPYLLKCLLDDKEYQRWDSLMLEKTIASMSDIAYCPRCDAPCIEDEEQHAQCSQCFFSFCTLCRERRHVGIACMTLDMKFQILQERQTSSQLKEAQRLREREKINEMLSVKEIHRDSKLCPTCKIAISRTEGCNKMLCGNCGQYFCYRCNKALDQSDPYEHFRYKQNSFLNAANDVLIVVNLMQRLITITTCFAGHARAIIATLASRLLGVVRSIMDPKVANSTPMISKEINLLQGSHSLSIWKPQSLETAVICHYVVG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1079 538 SUPERFAMILY UBC-like 97 204 IPR016135 -
Mibi12g1079 538 ProSiteProfiles TRIAD supradomain profile. 220 444 IPR044066 -
Mibi12g1079 538 SUPERFAMILY RING/U-box 385 444 - -
Mibi12g1079 538 MobiDBLite consensus disorder prediction 1 27 - -
Mibi12g1079 538 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 96 438 IPR031127 GO:0004842|GO:0016567
Mibi12g1079 538 SUPERFAMILY RING/U-box 295 356 - -
Mibi12g1079 538 SUPERFAMILY RING/U-box 231 309 - -
Mibi12g1079 538 SMART ibrneu5 381 442 IPR002867 -
Mibi12g1079 538 SMART ibrneu5 294 352 IPR002867 -
Mibi12g1079 538 Pfam IBR domain, a half RING-finger domain 294 352 IPR002867 -
Mibi12g1079 538 Pfam IBR domain, a half RING-finger domain 388 432 IPR002867 -
Mibi12g1079 538 Pfam RWD domain 99 193 IPR006575 GO:0005515
Mibi12g1079 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 309 IPR013083 -
Mibi12g1079 538 Gene3D Ubiquitin Conjugating Enzyme 67 201 IPR016135 -
Mibi12g1079 538 Gene3D - 366 455 - -
Mibi12g1079 538 ProSiteProfiles RWD domain profile. 99 199 IPR006575 GO:0005515
Mibi12g1079 538 Coils Coil 28 55 - -
Mibi12g1079 538 SMART RWD2001b 77 199 IPR006575 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1079 Mibi-ChrMibi12 25938565 25943735 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1079 184 438 ARIADNE family AT3G27710 22.556 9.23e-14 72.0