Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1077 ATGGCAGCTGAAGCTCCCTCTCACTTCAAGAACAACAGACCTCGCGGTTCTCAATCGAGGCGGAGGAATCAAGGTGTAAAACCCAAGTTTCGCTTCGTCCCCAAATCTGAATTGGATTCTTCTAATTCTGAGTTTGATCGTTCGTTTGAAAAATTAAGCCTTCGCGAGGAGGTTAATGTCGCGCGAGAATCGAACCCGGAGAACAAGAACGATTCGGAGTTGAAGAATGAAGTACGAAATAAGAGGGAAGAGAGTGATGTGGATGATTCATACGAGGAAGGGAATAGTGTTTTTAGGAGACTGGATAAGTTAAGGAAAGATGCAGAGGAGCTGGAATTGTCTGAGGAACAGCTCAGTATAAATAATCAATTGCAAGAAGATGAGCTACTTGCTTTGGAGTCAATTTATGGAGAAAATGTCTTCAACCTCGAGAGATGGAAAGGTCTCCGTTGTTTTCAGATACACGTACACATTGAAGTTTCAGATGGAATTAGCATCACAGCTAAGCTGAATTCTTCTAAGGAACATAAGACTGCAAGCAACAAAGCAGATGACTTCTCATACTCTTTTAAAGTCCAATATCTTCCACCTATTATTTTGACATGCTTATTGCCAAAGTCATACCCAAGCCATCAACCGCCACATTTTATAATTTCGGTAAAGTGGTTGGACTCCACAAGAATTTCTAGTCTATGCTCCATGTTAGATTCAATATGGACTGAGCAGCAGGGGCAGGAAGTTATATACCAGTGGGTAGAATGGTTACATGGTTTTTCTCTCTCTCATCTAGGATTCGATAAAGAGATTATTCTTGGTCCTTATGGCATGAAACATGTTGGAGATGAGCGTGCAGTCTCAGGAGCCGGGTCACTAGATGTTGATATTCCTTCATTACGAAGTTACAACAATGAGAGACATCATGAGACTTTCCTCAAAGAAATGCATGAATGTTGCATTTGCTTCAATGTATATGCTGGTACAGAGTTTGTTCAGTTACCCTGTCAGCACTTTTTTTGCTTAAAATGCTTGCAGACATTTTCTCAGATGCATGTAAAAGAAGGAACCCTCAATAATCTTCAGTGTCCCAATTCAAAATGCGCCGTTATGATCCCACCTTATCTATTAAAACGCTTGCTTGATGATAAAGAGTATGAGCGCTGGGAATCCTTGATGTTGGAGAAAACACTTGCATCAATGTCTGATGTTGCTTATTGCCCAAGATGTGACACACCTTGTATAGAAGATGAAGAACAGCATGCTCAGTGCTCTAAATGCTTTTTTAGTTTTTGTACCCTTTGCAGGGAGCGACGCCATGTCGGTCTAGCATGCATGACCCTGGACATGAAGCTTCAAATTTTGCAAGAGCGCCAGACTTCATCACAGTTAAAGGAAGCTCAGAGGTTGAGGGAACGTGAAAAGATAAATGAAATGCTCAGTGTCAAAGAAATTCATCGCGATTCTAAGCTGTGCCCTACTTGTCAAATGGCTATTTCCCGAACTGAAGGTTGCAATAAAATGGTGTGTGGTAATTGTGGCCAATATTTCTGTTACCGCTGCAACAAAGCTCTTGATGAATCGGACCCTTACGGGCATTTCAGGGATGGTGGATCCTGTGAACTGTTCCCACAAGAAATGGTGGAGGCTTGGGAAGAACGCATAAACCACCGTCAGGTGGTGGGACAGATACAAGCTGAACTCCTTTTTGAACGGGGCCAACGATGTCCTAATTGTCGCCAACTTAATGCAAAGGTTGGAAACAATAACCACATGTTTTGCTGGGCATGCCAAAGCCATTATTGCTACTCTTGCAAGCAGATTGTTAGGCGTAGTGCGCAGCATTATGGACCGAAAGGTTGCAAACAGCACTCTGATGATTAG 1878 0.4244 MAAEAPSHFKNNRPRGSQSRRRNQGVKPKFRFVPKSELDSSNSEFDRSFEKLSLREEVNVARESNPENKNDSELKNEVRNKREESDVDDSYEEGNSVFRRLDKLRKDAEELELSEEQLSINNQLQEDELLALESIYGENVFNLERWKGLRCFQIHVHIEVSDGISITAKLNSSKEHKTASNKADDFSYSFKVQYLPPIILTCLLPKSYPSHQPPHFIISVKWLDSTRISSLCSMLDSIWTEQQGQEVIYQWVEWLHGFSLSHLGFDKEIILGPYGMKHVGDERAVSGAGSLDVDIPSLRSYNNERHHETFLKEMHECCICFNVYAGTEFVQLPCQHFFCLKCLQTFSQMHVKEGTLNNLQCPNSKCAVMIPPYLLKRLLDDKEYERWESLMLEKTLASMSDVAYCPRCDTPCIEDEEQHAQCSKCFFSFCTLCRERRHVGLACMTLDMKLQILQERQTSSQLKEAQRLREREKINEMLSVKEIHRDSKLCPTCQMAISRTEGCNKMVCGNCGQYFCYRCNKALDESDPYGHFRDGGSCELFPQEMVEAWEERINHRQVVGQIQAELLFERGQRCPNCRQLNAKVGNNNHMFCWACQSHYCYSCKQIVRRSAQHYGPKGCKQHSDD 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1077 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 400 IPR013083 -
Mibi12g1077 625 ProSiteProfiles RWD domain profile. 127 262 IPR006575 GO:0005515
Mibi12g1077 625 ProSiteProfiles TRIAD supradomain profile. 313 542 IPR044066 -
Mibi12g1077 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 122 532 IPR031127 GO:0004842|GO:0016567
Mibi12g1077 625 SUPERFAMILY RING/U-box 566 622 - -
Mibi12g1077 625 Pfam RWD domain 123 256 IPR006575 GO:0005515
Mibi12g1077 625 Pfam IBR domain, a half RING-finger domain 479 523 IPR002867 -
Mibi12g1077 625 Pfam IBR domain, a half RING-finger domain 385 443 IPR002867 -
Mibi12g1077 625 SMART ring_2 317 364 IPR001841 -
Mibi12g1077 625 SMART ring_2 574 603 IPR001841 -
Mibi12g1077 625 SMART ring_2 490 519 IPR001841 -
Mibi12g1077 625 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Mibi12g1077 625 SUPERFAMILY RING/U-box 312 394 - -
Mibi12g1077 625 MobiDBLite consensus disorder prediction 14 28 - -
Mibi12g1077 625 SUPERFAMILY UBC-like 121 258 IPR016135 -
Mibi12g1077 625 SMART ibrneu5 385 443 IPR002867 -
Mibi12g1077 625 SMART ibrneu5 472 538 IPR002867 -
Mibi12g1077 625 FunFam RBR-type E3 ubiquitin transferase 312 396 - -
Mibi12g1077 625 MobiDBLite consensus disorder prediction 1 92 - -
Mibi12g1077 625 Coils Coil 101 128 - -
Mibi12g1077 625 SUPERFAMILY RING/U-box 476 532 - -
Mibi12g1077 625 FunFam RBR-type E3 ubiquitin transferase 113 264 - -
Mibi12g1077 625 MobiDBLite consensus disorder prediction 40 92 - -
Mibi12g1077 625 FunFam RBR-type E3 ubiquitin transferase 458 569 - -
Mibi12g1077 625 Gene3D Ubiquitin Conjugating Enzyme 113 264 IPR016135 -
Mibi12g1077 625 ProSiteProfiles Zinc finger RING-type profile. 317 365 IPR001841 -
Mibi12g1077 625 SUPERFAMILY RING/U-box 385 448 - -
Mibi12g1077 625 SMART RWD2001b 127 262 IPR006575 GO:0005515
Mibi12g1077 625 Gene3D - 459 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1077 Mibi-ChrMibi12 25917336 25923418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1077 280 550 ARIADNE family AT3G27710 24.373 4.76e-15 76.3