Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1076 ATGGCAGCTGAAGCTCCCAGACCTCACGATTCTCAGCCGAAGTGGAGTAATCAACGTGCAAACCTCAAATCTGAATTGCATTCTTCCACTTCTGAGGGGGATGATTTTTCGCTTCATGAATTAAGCATCCGCGACGACGACGTCGATGTCGCTGGAGAATCGGAAACGGGAAAAAAGGACTGCTCCGAGATGAAGAATGAAGTAGGAAACAAGATGGAAGAGAATTATGTGGATGATTCAAATAAGGAAGGGAATGATAGGGTTTTTAGTAGACTGGATAAGCTAATGAGGGATTCAGGGCAGCCGGAATTGTCAGAGGAACAGCTCAGTATAAATGATCAATTGCAAGAAGATGAGATACAAATAGATATTACAGTTTTAGGTGGAATTGGCATCACAGCTAAGCTGAATTCCTATAATGAACATAAGATTGCAATCAGCAATGCAGATGATTTCTCATACTCTTTAAGAGTCCAATATCTTCCACCTATTATTTTGACATGTTTATTGCCAAAGTCATACCCAAGCCTTCAACCGCCGTATTTTATAATATCTATTAAGTGGTTGGAGTCCACAATAATTTCTAGTCTATGCTCCATGTTAGATTCAATATGGATTGAGCAGCAAGGCCAGGAAGTTATATACCAGTGGGTAGAATGGTTACATGGTTTTTCTCTTTCTCATTTGGGATTTGATAAAGAGATTACTCTTGGTCCTTATGGCATGAAACATGTTGGAGATGAGCGTGCAGTCTCAGGAGCTGTTTCCCTTGATTTTGATATTCCTTCATTGCGAAGTTACAACAATGAGAGACATCATGAGAACTTCTTGAAAGAAATGCATGAATGTTGCATTTGCTTCGAGACTTTTGCTCAAATGCATGTAAAAGAAGGCACGATCGGCAATCTTCAATGTCCCAATTCAAAATGTGCTGTTATGTTTCCACCGGCTCAATTAAAATGCTTTCTCAATGGTAAAGAGTATGAACGCTGGGAATCCTTGATGTTGGAGAAAACACTTGCATTAATGTCTGATGTTTCTTATTGCCCAAGATGTGAAACACCTTGTATAGAAGATGAAGAAAAGCATGCTCAATGCTCTAAATGTTTCTTCAGCTTTTGTACCCTTTGCAGGGAGCGACGTCATGTTGGCAAATCATGCACCACCCTAGACATGAAGCTTCAAAGTTTACAAGAGCGCCTGAATTCATCTCAATTAGAGGAAGCTCAGATGCTGAGGGAACGTGACATGTTTAATGAAATGCTCAGCCTCCAACAAATTCGTAGTGATTCTGAGCAGTGTCCTTCTTGTGCAATGGCTATTTACCGAATTGCAGGCTGCAATAGAATGACGTGTACTTATTGTGGCCAACGTTTCTGTTACAGCTGCAACAAACCAATTGATAAAAATGATCCTGGCGGACATTACAGGTTGGAAACAATAATTATTTGTTTTGCCGGGCATGCCGTAGCCATTATTGCTATTCTTGCAAGCAGATTGTTGAGAGTAGCTCGCAGCATTATGGACGCAAGGGTTGTAAAAAGCACTCTGATGATTAGTGAGGAGATCAATTGTTGTATCCTGATGATGGAGATGGTCGGATGA 1605 0.4069 MAAEAPRPHDSQPKWSNQRANLKSELHSSTSEGDDFSLHELSIRDDDVDVAGESETGKKDCSEMKNEVGNKMEENYVDDSNKEGNDRVFSRLDKLMRDSGQPELSEEQLSINDQLQEDEIQIDITVLGGIGITAKLNSYNEHKIAISNADDFSYSLRVQYLPPIILTCLLPKSYPSLQPPYFIISIKWLESTIISSLCSMLDSIWIEQQGQEVIYQWVEWLHGFSLSHLGFDKEITLGPYGMKHVGDERAVSGAVSLDFDIPSLRSYNNERHHENFLKEMHECCICFETFAQMHVKEGTIGNLQCPNSKCAVMFPPAQLKCFLNGKEYERWESLMLEKTLALMSDVSYCPRCETPCIEDEEKHAQCSKCFFSFCTLCRERRHVGKSCTTLDMKLQSLQERLNSSQLEEAQMLRERDMFNEMLSLQQIRSDSEQCPSCAMAIYRIAGCNRMTCTYCGQRFCYSCNKPIDKNDPGGHYRLETIIICFAGHAVAIIAILASRLLRVARSIMDARVVKSTLMISEEINCCILMMEMVG 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1076 534 SUPERFAMILY RING/U-box 280 340 - -
Mibi12g1076 534 MobiDBLite consensus disorder prediction 1 62 - -
Mibi12g1076 534 MobiDBLite consensus disorder prediction 11 27 - -
Mibi12g1076 534 Gene3D - 413 482 - -
Mibi12g1076 534 SMART ibrneu5 329 387 IPR002867 -
Mibi12g1076 534 SMART ibrneu5 410 484 IPR002867 -
Mibi12g1076 534 Pfam RWD domain 138 222 IPR006575 GO:0005515
Mibi12g1076 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 341 IPR013083 -
Mibi12g1076 534 ProSiteProfiles TRIAD supradomain profile. 249 488 IPR044066 -
Mibi12g1076 534 SUPERFAMILY UBC-like 125 233 IPR016135 -
Mibi12g1076 534 Gene3D Ubiquitin Conjugating Enzyme 103 230 IPR016135 -
Mibi12g1076 534 PANTHER UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED 271 468 - -
Mibi12g1076 534 Coils Coil 394 414 - -
Mibi12g1076 534 Pfam IBR domain, a half RING-finger domain 421 468 IPR002867 -
Mibi12g1076 534 Pfam IBR domain, a half RING-finger domain 329 387 IPR002867 -
Mibi12g1076 534 ProSiteProfiles RWD domain profile. 118 228 IPR006575 GO:0005515
Mibi12g1076 534 SUPERFAMILY RING/U-box 421 477 - -
Mibi12g1076 534 SMART RWD2001b 106 228 IPR006575 GO:0005515
Mibi12g1076 534 SUPERFAMILY RING/U-box 329 391 - -
Mibi12g1076 534 MobiDBLite consensus disorder prediction 28 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1076 Mibi-ChrMibi12 25908336 25913490 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1076 282 500 C3H Transcription Factor Family AT2G31760 20.623 3.02e-07 51.2