Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1071 ATGGGAAGGGTTCCATGTTGTGAGGAGAGAAGTGGGGTGATAAAGAAAGGGCCATGGACACCAGAAGAAGATGAGAAGCTTACGGAATATATAAGAAAGCATGGGCATGGAAGTTGGAGGACACTCCCAAAGCATGCTGGTCTCAATAGGTGTGGCAAGAGCTGTAGGCTGAGGTGGACTAATTATCTGAGGCCTGATATTAAGAGAGGCCAATTCTCTAAAGAAGAAGAACGAATCATCATCAACCTTCATTCAGTCCTGGGAAACAAGTGGTCAAAGATTGCAGGCCATCTTCCTGGAAGAACAGATAATGAAATAAAGAACTATTGGAACACACATATAAGGAAGAAGCTGCTTCAGATGGGTATTGACCCTGAAACTCACAAACCCAGAACTGATTACAACCACCTCCTCACCAATCTCTCTCACTTGCTTGGTATCTCATCATCATCATCAAACAATAATAACAATATTCCTCTTATGGTTTCATCACAACTAGGTCTCACTTCTCAGCTCACCAAACTCCAACTTCTCCAAAACCTATTACAACTTGCCAATTCATCAAACCCTTTCCTCTTGGGCAATAATAGTAACAATCATACCCTCCTAAACCTGCCACCTCATCAACTTCAATCCTTTATGAATGGGACTAATGGAGTTCAAGAACATGCAAATCCACATGGTCTATTATTCCCTCAAGCACAAGGAGGTTTTGGTTTAGAAGCCTTCGGTTTAAATAATGGAAGCAACACTTATGGTATGATTCCACATCAGAGCCATCAATCGGAAATGAAAATACCTGCTCTAGTCTCGGCGTCTCCAGCGACCGGCTCAGCCGTGAAGCAGACGGACGGTAGCTGTAATACAGCTCAAGTTTCCACTGATCAGTCACCTAATTCATCTACAATGTTTGAGAGTTGGGAGAAGTTCTTGGATGATGAAATGATGGGTTCTGACTGGAAGGAGATTCTTGAACTATCATCAACTTTGGCGTCTCCAGTCTCATGGTAG 1011 0.4293 MGRVPCCEERSGVIKKGPWTPEEDEKLTEYIRKHGHGSWRTLPKHAGLNRCGKSCRLRWTNYLRPDIKRGQFSKEEERIIINLHSVLGNKWSKIAGHLPGRTDNEIKNYWNTHIRKKLLQMGIDPETHKPRTDYNHLLTNLSHLLGISSSSSNNNNNIPLMVSSQLGLTSQLTKLQLLQNLLQLANSSNPFLLGNNSNNHTLLNLPPHQLQSFMNGTNGVQEHANPHGLLFPQAQGGFGLEAFGLNNGSNTYGMIPHQSHQSEMKIPALVSASPATGSAVKQTDGSCNTAQVSTDQSPNSSTMFESWEKFLDDEMMGSDWKEILELSSTLASPVSW 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1071 336 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Mibi12g1071 336 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Mibi12g1071 336 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Mibi12g1071 336 CDD SANT 18 63 IPR001005 -
Mibi12g1071 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 254 - -
Mibi12g1071 336 SMART sant 68 116 IPR001005 -
Mibi12g1071 336 SMART sant 15 65 IPR001005 -
Mibi12g1071 336 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Mibi12g1071 336 Gene3D - 71 118 - -
Mibi12g1071 336 MobiDBLite consensus disorder prediction 277 301 - -
Mibi12g1071 336 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Mibi12g1071 336 FunFam MYB-related transcription factor 15 68 - -
Mibi12g1071 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 63 IPR017930 -
Mibi12g1071 336 CDD SANT 72 114 IPR001005 -
Mibi12g1071 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Mibi12g1071 336 FunFam Transcription factor MYB39 71 132 - -
Mibi12g1071 336 Gene3D - 15 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1071 Mibi-ChrMibi12 25835727 25838191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1071 1 334 MYB Transcription Factor Family AT3G02940 48.830 2.93e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mibi12g1071 Myb_DNA-binding 2.9e-17 CL0123