Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1067 ATGGCTGTCATGAAAAAAAGGACACACAAATGTGAGCGAAATCCCAATCTCGAACAGTACATTCAAATTGACCTTCGCCGCCCTTTGTCTTCCTCAATTGATCCTAGGGTTTCTGCGAATAAGGCTTCATCATCATACGTTTCTGAGCATTTCCCTTCAATCAAAAATATGGGGAAGAAGAAACCCAAGGAGCCCCAAGAAACCCCTAAAACCAACGTTACTTCCGACATATTCAGCAAGCTATTTGGCAATGTATCGGAACAAGGCACCGCCACTTCTCTATTCTCAGATAACAACCCCTTTCGTAAGAAGCCTCTTGAAGATGGCACCGTGGTCTCCAATAGCCAGGCCGATTCTGAATTGCTGAAGAAAGGTAAGAAACGTAAAGAGAAGAATTCGTCTATTGATTCTGATAATGCCTCTGAAGCTTCGGTGAAGAAGGTGAAATCAAATAGAACACCGAAGGATGATGAGACTAAAGGGTTTGATTTGGGTGCGGAGGAGACTTCACTGCCGAAGAAAGAAAAGGTTTTGTCCAAGGAAGGTGAGTTAAATGGTGATGATGAGAAGAAGAGGAAGAATAACAAGCGAAAGAGGGATGATATGGAGAAAGAGTGGGAATTTAAGAGGTATGGGGAAGTGGAGGGTGAGGAAGATGATGGGCATGGCTTGGGGAAGAATGTTGTTGGGGCTAAGAGGAAGACGGTGGATAATCCTGCTGACATGTTGGTAACGAATGAAGGTTTTGATGATGAGAAGAAGCTCTTGAGAACTATATTTGTTGGGAATTTGCCGCTCAAGGTGAAAAAGAAGACTTTATTGGCGGAGTTTAAGAAGTTTGGAGAGGTTGAATCTGTGAGGATTCGTTCTGTTCCAATATTAGATACCAAAAAACCTAGAAAGGGAGCTATCCTTTCGAAGAAAATCAATGATGCTGGTGATAGTGTTCATGCATACATTGTTTTCAAGACAGAGCAGTCAGCTCAGGATTCTCTGTCCCATAACATGGCCATGGTTGGAGGAAATCACATTCGTGTGGATAGAGCATGTCCACCTCGCAAGAAACTTAAAGGAGAGCATACTCCACTGTATGATAACAAGAGAACTGTTTTTGTTGGCAACCTCCCGTTTGATGTGAAGGATGAAGAACTATATAAACTATTTTGTGGTATTTCCAACATGGCATCCAGCATAGAAGCAGTTAGAGTCATTAGAGATCCTCATTTGAATATCGGGAAGGGTATCGCCTATGTGCTGTTTAAAACAAAGGAAGCTGCTAATTTCGTTGTTAGGAAGCGGAACAACTTGAAGCTTCGAGACCGAGAACTGAGACTTACTCATGCGAAAGTTGATGCCACTCCATCCAAAAGGCCAAAACCATCACCCCAAGCTTCTGGTACACCTGCGAAGAAGGCAGCCATGGCTTCAAGGTCCCCTTCCAGCAGCAGCAATAACAAGACAAATAAAAAGTCCAATATGTCTTACCAAGGTTTGAGGGCAAACAAAACTGTTGTCCACAAGAAATCAGCAACCCGCGGAGGTATTGAGCAAACAACAGAGCGCAAGACGAAACGACCATCAGTTGCTGCCAGAAAGGCTAAAGTAAAAGCAAATTTGCCAAAGGAAGATGGATCATCAAAACAAGCGGGAAAGAAACGCAAGCTTGATAGTCGAACTCCAGATAGCTCTCTAAGAAAGAAGAAATTTAAGAAGAATAGGTAG 1722 0.4297 MAVMKKRTHKCERNPNLEQYIQIDLRRPLSSSIDPRVSANKASSSYVSEHFPSIKNMGKKKPKEPQETPKTNVTSDIFSKLFGNVSEQGTATSLFSDNNPFRKKPLEDGTVVSNSQADSELLKKGKKRKEKNSSIDSDNASEASVKKVKSNRTPKDDETKGFDLGAEETSLPKKEKVLSKEGELNGDDEKKRKNNKRKRDDMEKEWEFKRYGEVEGEEDDGHGLGKNVVGAKRKTVDNPADMLVTNEGFDDEKKLLRTIFVGNLPLKVKKKTLLAEFKKFGEVESVRIRSVPILDTKKPRKGAILSKKINDAGDSVHAYIVFKTEQSAQDSLSHNMAMVGGNHIRVDRACPPRKKLKGEHTPLYDNKRTVFVGNLPFDVKDEELYKLFCGISNMASSIEAVRVIRDPHLNIGKGIAYVLFKTKEAANFVVRKRNNLKLRDRELRLTHAKVDATPSKRPKPSPQASGTPAKKAAMASRSPSSSSNNKTNKKSNMSYQGLRANKTVVHKKSATRGGIEQTTERKTKRPSVAARKAKVKANLPKEDGSSKQAGKKRKLDSRTPDSSLRKKKFKKNR 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1067 573 SUPERFAMILY RNA-binding domain, RBD 364 463 IPR035979 GO:0003676
Mibi12g1067 573 MobiDBLite consensus disorder prediction 120 202 - -
Mibi12g1067 573 CDD RRM2_RBM34 369 446 IPR034221 -
Mibi12g1067 573 MobiDBLite consensus disorder prediction 29 75 - -
Mibi12g1067 573 MobiDBLite consensus disorder prediction 90 202 - -
Mibi12g1067 573 MobiDBLite consensus disorder prediction 33 51 - -
Mibi12g1067 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 301 IPR000504 GO:0003723
Mibi12g1067 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 370 444 IPR000504 GO:0003723
Mibi12g1067 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 351 IPR000504 GO:0003723
Mibi12g1067 573 MobiDBLite consensus disorder prediction 445 573 - -
Mibi12g1067 573 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 348 542 - -
Mibi12g1067 573 SMART rrm1_1 369 446 IPR000504 GO:0003723
Mibi12g1067 573 SMART rrm1_1 258 347 IPR000504 GO:0003723
Mibi12g1067 573 MobiDBLite consensus disorder prediction 474 499 - -
Mibi12g1067 573 CDD RRM1_RBM34 257 347 IPR034220 -
Mibi12g1067 573 SUPERFAMILY RNA-binding domain, RBD 252 357 IPR035979 GO:0003676
Mibi12g1067 573 Gene3D - 359 456 IPR012677 -
Mibi12g1067 573 Gene3D - 252 356 IPR012677 -
Mibi12g1067 573 MobiDBLite consensus disorder prediction 535 563 - -
Mibi12g1067 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 368 450 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1067 259 449 Eukaryotic Initiation Factors Gene Family AT1G71770 25.126 3.55e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1067 12 25780293 25784554 Mibi12g1067 12 25780293 25784554 ECH