Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1064 ATGGACTATGGTCGAGATGGGAACGTCGTACAAATAATCGCTGGTGGTGGAAATGAAAGCTGGTCCAATGACCAAGCAGTTTGGGCAACAGAAGAAGATTATCGATTCTTCAACAACGAAAACGCTGACACTCCCTCCGACTCAAATTACGATCAAAGGCAACAGTCACAATCACGATCTGGAAGCGAACCCCCAAACAAGAAATCTAGGAATTCTCAAGATGTCACTTCCTCAAATCGGTCCAAAGCTATAGGGAAAATGTTCTTCAAGACAAAACTATGTTGCAAATTCAGGGCAGGCACGTGTCCTTATATCACAAACTGTAATTTTGCTCACAGTGTTGAGGAGCTTCGTAGGCCGCCTCCGAATTGGCAAGAAATTGTGGCTGCTCATGAAGAGGAGAAATCTGTTATGTTGGAACCGAGGGAGGAGTTTCAGATTCCGTCTGTTGTGTCTACTGGGTTTTCTGGGGAGAATCAGAGAGCGTATAAGGGTCGTCATTGTAAGAAGTTTTACACGGAAGAGGGATGTCCTTATGGAGATAATTGTACATTTCTTCATGATGAGCAATCTAGGAATCGTGAGAGTGTGGCTATAAGTTTGGGCCCTGGTGGGTATGGTGGTGCTGCTGCTGCTGCGAGTGGTTCTAATAATTCCAAGCCTTCGAATTGGAAAACAAGGATTTGTAATAAATGGGAGATGACTGGGTATTGCCCATTTGGAAATAAATGTCATTTTGCTCATGGTGCTGCAGAGTTGCACCGATATGGAGGGGGGCCTATGGAGGGAGAAAATAGAGACACTGCATCTGCTACTGCTCCTGACACGAAGCAGGGTGGGGTGCCTTCGAAAACGCCTGCTGATAATGTCGTTGCATCAGTAACTCCTGTGGCTCATCCTGATGTCTATCACATCGGAGTTCCTTCACAAAGGTCTTCCATTGTGATTCAGAGGCCAGGTCAGAGAGCTCATCAGAAGTGGAAGGGTCCTGATAAAATCAGCAGGATATATGGTGATTGGATTGATGACTTGGAATGA 1038 0.4557 MDYGRDGNVVQIIAGGGNESWSNDQAVWATEEDYRFFNNENADTPSDSNYDQRQQSQSRSGSEPPNKKSRNSQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSVEELRRPPPNWQEIVAAHEEEKSVMLEPREEFQIPSVVSTGFSGENQRAYKGRHCKKFYTEEGCPYGDNCTFLHDEQSRNRESVAISLGPGGYGGAAAAASGSNNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGAAELHRYGGGPMEGENRDTASATAPDTKQGGVPSKTPADNVVASVTPVAHPDVYHIGVPSQRSSIVIQRPGQRAHQKWKGPDKISRIYGDWIDDLE 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1064 345 SUPERFAMILY CCCH zinc finger 221 254 IPR036855 GO:0046872
Mibi12g1064 345 MobiDBLite consensus disorder prediction 269 283 - -
Mibi12g1064 345 FunFam Zinc finger, CCCH-type 156 194 - -
Mibi12g1064 345 SUPERFAMILY CCCH zinc finger 86 119 IPR036855 GO:0046872
Mibi12g1064 345 SUPERFAMILY CCCH zinc finger 161 190 IPR036855 GO:0046872
Mibi12g1064 345 FunFam Zinc finger CCCH domain-containing protein 84 120 - -
Mibi12g1064 345 ProSiteProfiles Zinc finger C3H1-type profile. 223 251 IPR000571 GO:0046872
Mibi12g1064 345 MobiDBLite consensus disorder prediction 39 79 - -
Mibi12g1064 345 MobiDBLite consensus disorder prediction 32 79 - -
Mibi12g1064 345 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Mibi12g1064 345 Gene3D - 215 255 - -
Mibi12g1064 345 Gene3D - 83 119 - -
Mibi12g1064 345 MobiDBLite consensus disorder prediction 257 287 - -
Mibi12g1064 345 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 224 249 IPR000571 GO:0046872
Mibi12g1064 345 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 113 IPR000571 GO:0046872
Mibi12g1064 345 PANTHER CCCH ZINC FINGER/TIS11-RELATED 216 274 IPR045877 GO:0003729
Mibi12g1064 345 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Mibi12g1064 345 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Mibi12g1064 345 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Mibi12g1064 345 SMART c3hfinal6 223 250 IPR000571 GO:0046872
Mibi12g1064 345 Gene3D - 155 202 - -
Mibi12g1064 345 FunFam zinc finger CCCH domain-containing protein 15-like 217 256 - -
Mibi12g1064 345 Pfam CCCH-type zinc finger 166 188 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1064 Mibi-ChrMibi12 25738207 25741614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1064 225 253 C3H Transcription Factor Family AT1G68200 62.069 2.35e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi12g1064 zf-CCCH 1.1e-10 CL0537