Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1061 ATGGCTGCTCTTGGCAACCCAAAAACTTGGATTCCCTATGTGAACATCAGAGATTGCTCTCAAGGTTTTTGCAGTGTTTATTGTCCACAGTGGTGTTACATAGTTCTTCCTCCTCCTCCACCTCCTACCTTAGATTTCCCTCAAGATGAAGATTCTTCCCCAAATTTCTCTCCTTTGGTTATAGCCATAATTGGGATCTTGGCCAGTGCTTTCCTTCTGGTAAGTTATTACACTTTCATATCCAAATACTGTGGAAATAGAGGAGTTGGGTCTTCAAACAGAGAGAATAATCTTCACCAGAATGATGAGATTGAAGATGCTCACAACCCTTCACTGCACGAGCCATGGCATGTCCAAACCAATGGATTAGATGAAGCTCTGATAAAATCCATCACAGTGTGTAAGTACAAAAGAGGAGATGGACTGGTTGGTGTTACAGATTGCTCTGTATGTCTCAGTGAGTTTAGAGAAGAAGAAAATGTCAGACTTTTGCCTAAATGTAGCCATGCTTTTCACCTTCCATGTATTGATCAATGGCTTAAATCTCATTCTAATTGTCCTCTCTGTCGTTCTCTTATCTTCACCTTCAATGCTTCCACTCCTCAAGTGGTTCTTCCATCTGTGATACAAGAATCAGAACCTCCCTCAAGAAATCATGAATCTTCTTCTTCATCAAGGGAAATTCAGAATGCAAGTGGTGAAGAAAATGGAGGAGGAGGGGCTGGAAGAAGAAACAATGAAACAGTTGGGGTTGTTGAAGAAGGTCCAAAGCCTGCTTTGCGAGCTTTTAGTGATCTGGGTTTTCTGAGAGGAAGGCATAGAATGATTGAGATGATAAGAGATGAAGGAGATGAAGCCATAAGAAGGTCAGTGTCAATGGATCATCATTCTTTACTCATTGGAGGAGTAGGATCAAACGAAGCAGGTCCTTCTTTGAAGAGATCATCACAAGGAGAAAGTAGTAGCAAATCTAATAGTAGCAGAAGAAGAGTGATTCTGCATTGTGTGTTGAGTCCTATCACAATGAAGAGATCATTTTCCAGTGGAAGATTCTCGTTTCGCAGAAATGGCAGAGGAAGGCAGGGGATTATCCCTGTCTGA 1101 0.416 MAALGNPKTWIPYVNIRDCSQGFCSVYCPQWCYIVLPPPPPPTLDFPQDEDSSPNFSPLVIAIIGILASAFLLVSYYTFISKYCGNRGVGSSNRENNLHQNDEIEDAHNPSLHEPWHVQTNGLDEALIKSITVCKYKRGDGLVGVTDCSVCLSEFREEENVRLLPKCSHAFHLPCIDQWLKSHSNCPLCRSLIFTFNASTPQVVLPSVIQESEPPSRNHESSSSSREIQNASGEENGGGGAGRRNNETVGVVEEGPKPALRAFSDLGFLRGRHRMIEMIRDEGDEAIRRSVSMDHHSLLIGGVGSNEAGPSLKRSSQGESSSKSNSSRRRVILHCVLSPITMKRSFSSGRFSFRRNGRGRQGIIPV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1061 366 MobiDBLite consensus disorder prediction 301 328 - -
Mibi12g1061 366 CDD RING-H2_PA-TM-RING 147 190 - -
Mibi12g1061 366 MobiDBLite consensus disorder prediction 208 253 - -
Mibi12g1061 366 FunFam RING-H2 finger protein ATL54 123 196 - -
Mibi12g1061 366 Pfam Ring finger domain 147 190 IPR001841 -
Mibi12g1061 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 195 IPR013083 -
Mibi12g1061 366 SUPERFAMILY RING/U-box 147 196 - -
Mibi12g1061 366 MobiDBLite consensus disorder prediction 309 328 - -
Mibi12g1061 366 SMART ring_2 148 189 IPR001841 -
Mibi12g1061 366 MobiDBLite consensus disorder prediction 208 232 - -
Mibi12g1061 366 PANTHER RING-H2 FINGER PROTEIN ATL16 44 299 IPR044600 GO:0016567|GO:0016740
Mibi12g1061 366 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1061 Mibi-ChrMibi12 25710798 25711898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1061 6 366 C3H Transcription Factor Family AT5G17600 40.682 7.42e-68 216