Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1048 ATGACAGACTATAGGTCTCCCCTTCCGACGATGAACCTCTGGACCGATGACAACTCCTCCGTCATGGACGCCTTCATGACCTCCGATCTCTCCGTCCTCTGGCCCCAATCCTCTGCTTCCACCACCACCACCACCAACCCTACACCCTCCTCCTCCCTCTTCAACCAAGAAACCCTCCAACAGCGCCTTCAATCCCTCATCGAAGCCCCCACAGATCCCTGGACCTACGCCATCTTCTGGCAATCCTCCTACGACTACTCCGGCTCCTCCTTCCTCGGCTGGGGCGACGGTTACTACAAAGGCGAAGACCTCAAATCCAAGCCCAAACCCCTACCCAAAACCACCACATCGTCCTCTTCTCCAGCCGAGCAAGAGCACCGTAAGAAGGTCCTACGGGAACTCAACTCCCTAATCTCTGGTTCTTCTGCTCCAAACGACGATGCCGTTGACGAAGAGGTCACTGATACTGAGTGGTTCTTCCTTGTTTCTATGACTCAGTCGTTTGTCAACGGCGATGGCTTGCCTGGCCAGGCGTTTTATAGCTCCACTCCTGTGTGGATCGCCGGAGGCGAGAGGCTTGCGGCGGCGAGCTGTGAGAGGGCGAGGCAGGGCCAGGTGTTTGGGCTTCAGACTCTGGTTTGTATACCCTCCGCGAATGGTGTCGTTGAGCTTGGATCTACTGAGTTGATCTTCCAGAACTCGGATCTGATGAATAAGGTCAAGGTTTGGTTCAATTTCAACAATCCTGATATTGGTGGTGGTGGATCCTCTTCTTGGAATAACCTCATGAACCTTAACAATCATAATGGTGGTGATCAAGGTGAGAACGATCCTTCCTCTCTCTGGCTCAACGATCCGTCCTCTGGAATCGAAATCAGAGATTCCGCCGCCGGCGCCGCCGCAACAACCTCTGCCGGCGCCGCCGTGCCGGCTTCGATTCCGAGTATCCAGACCGTAGCTAAGCCAATGCAGTTTGAAACACCGGTTTCGAGTACTCTAACGGAGGCACCTAGTATTGTTCATGTTCCGAGTAATCATCAGTTTGGTAACAATCAACGACTACAGCAACAGCAATCGCAGAACCAGGGGTTTTTCTCCAAGGAGTTGAACTTCTCGGAGTATGGATTCGACGGGAACGGACTGAAGAACGGGAGTGTTCATTCGTTGAAGCCGGAATCTGGTGAGATTTTGAACTTTGGGGAGAGCAAGAGGAATTCGAATTCGAATTCGTATGGTGGGAATGGGAATGGGAATTTCTTGACAGGACAGAATCAATTCGTTGGGGAAGATAACAACAAGAAGAGAAGGTCGCCTACTTCCAAAGGTAGCAACGATGAAGGGATGCTATCCTTCACTTCTGGTGTGATTTTGCCGGCTTCGAATATGAAGTCTAGCGGCGGCGGCGGGGGCGGCGGAGATTCCGATCACTCCGATCTCGAAGCGTCGGTGGTGAAGGAGGCGGATAGTAGCAGAGTGGTCGAGATGGAAAAGAAGCCTCGGAAGAGAGGAAGGAAGCCGGCGAATGGAAGGGAAGAGCCTCTGAATCATGTTGAAGCAGAGAGGCAGAGAAGGGAGAAATTGAATCAGAGATTCTATGCTTTAAGAGCTGTGGTACCAAATGTTTCAAAAATGGACAAAGCATCACTACTGGGTGATGCAATATCTTACATCAATGAGCTCAAGTCTAAGCTGCAGAATCAGGAATTGAACAATAGTGATCTGCAGAAGCAGCTGGATTCAGTGAAGAAGGAGCTGGAGCTTGCCACTAAAAGTAAGGATTCTCGTGCAGCTACACCACCAGATAAGGAACAAAAGGCCTCCAGCAATAACAGCCAATCAAATGGAAAGCTCATAGATTTGGACATTGATGTGAAGATCATAGGTTGGGATGCGATGATTAGGATCCAATGTAGCAAGAGGAATCATCCAGCTGCGAGGTTGATGGCTGCTTTGGAGGAACTAGACTTGGAAGTGAACCATGCTAGTGTGTCAGTAGTGAATGATTTGATGATCCAACAAGCGACAGTGAAGATGGGAAGTCGATTCTACACGCAGGAGCAGCTTCGGTTAGCACTTACATCCAAGGTTGGAGATGTCCGATAA 2103 0.5045 MTDYRSPLPTMNLWTDDNSSVMDAFMTSDLSVLWPQSSASTTTTTNPTPSSSLFNQETLQQRLQSLIEAPTDPWTYAIFWQSSYDYSGSSFLGWGDGYYKGEDLKSKPKPLPKTTTSSSSPAEQEHRKKVLRELNSLISGSSAPNDDAVDEEVTDTEWFFLVSMTQSFVNGDGLPGQAFYSSTPVWIAGGERLAAASCERARQGQVFGLQTLVCIPSANGVVELGSTELIFQNSDLMNKVKVWFNFNNPDIGGGGSSSWNNLMNLNNHNGGDQGENDPSSLWLNDPSSGIEIRDSAAGAAATTSAGAAVPASIPSIQTVAKPMQFETPVSSTLTEAPSIVHVPSNHQFGNNQRLQQQQSQNQGFFSKELNFSEYGFDGNGLKNGSVHSLKPESGEILNFGESKRNSNSNSYGGNGNGNFLTGQNQFVGEDNNKKRRSPTSKGSNDEGMLSFTSGVILPASNMKSSGGGGGGGDSDHSDLEASVVKEADSSRVVEMEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQNQELNNSDLQKQLDSVKKELELATKSKDSRAATPPDKEQKASSNNSQSNGKLIDLDIDVKIIGWDAMIRIQCSKRNHPAARLMAALEELDLEVNHASVSVVNDLMIQQATVKMGSRFYTQEQLRLALTSKVGDVR 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1048 700 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 59 244 IPR025610 -
Mibi12g1048 700 MobiDBLite consensus disorder prediction 399 428 - -
Mibi12g1048 700 MobiDBLite consensus disorder prediction 264 287 - -
Mibi12g1048 700 MobiDBLite consensus disorder prediction 105 126 - -
Mibi12g1048 700 FunFam Transcription factor bHLH13 504 578 - -
Mibi12g1048 700 MobiDBLite consensus disorder prediction 442 460 - -
Mibi12g1048 700 MobiDBLite consensus disorder prediction 478 519 - -
Mibi12g1048 700 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 511 560 IPR011598 GO:0046983
Mibi12g1048 700 Gene3D - 503 591 IPR036638 GO:0046983
Mibi12g1048 700 Pfam Helix-loop-helix DNA-binding domain 515 560 IPR011598 GO:0046983
Mibi12g1048 700 PANTHER MYC 44 695 IPR045084 GO:0003700|GO:0006355
Mibi12g1048 700 SMART finulus 517 566 IPR011598 GO:0046983
Mibi12g1048 700 MobiDBLite consensus disorder prediction 264 286 - -
Mibi12g1048 700 MobiDBLite consensus disorder prediction 398 519 - -
Mibi12g1048 700 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 512 581 IPR036638 GO:0046983
Mibi12g1048 700 MobiDBLite consensus disorder prediction 588 612 - -
Mibi12g1048 700 CDD bHLH_AtAIB_like 508 584 - -
Mibi12g1048 700 Coils Coil 557 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1048 Mibi-ChrMibi12 25485012 25487114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1048 1 697 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.134 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi12g1048 bHLH-MYC_N 4.4e-54 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1048 12 25485012 25487114 Mibi12g1048 12 25485012 25487114 ECH