Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1012 ATGTGGTGGTTTGGAATGACTGTGCAGCTTTGCTTCTTGTTTTCCATTGGTTTCTCTGAGGGTTCCACCTCTATTAGGTATGCTTTACTGAAGAATAACCTCACACAAGCGTCATCTTCTCCTGCGGTTAAGCTATATCAAAATCAAAACCAGGTTGTGATAGATAATGGAATTGTCCAAGTCACGTTGTCCAATCCAGAAGGCTTTGTCCTCGCAATATCTTATAATGGAATTGACAATGTACTCGAAGCTCAAAACGAAAATCAAAATAGAGGGTATCTTGATGTTGTTTGGAGTAATGAAGGTGGTGGTGGTTTTCAGAAAATCGGGGGGACGAAATTCTCAGTCATAGAAAATACCGAAGATCAAGTGGAAGTTTCATTTTTAAGAGAATGGACACATTCCATGAACGGATCTGTCCCTATAAAAATAGACATGAGGTATATAATGCGAAAGGGCAACTCCGGATATTACTCATACGCAATATTTGAGCGGCCAGAAGGATTTCCATCAGTGCAGGTTTTTCAGATTAGGCTAGTTTATAAGCTCCGACAAGACAAGTTCAACTATATGGCTATATCAAGGAATAGACAAAGAGTAATGCCAACAGCTGAGGATAGAAACAGTGGACAGAAACTAGCTTATCCTGAAGCTGTTCTCTTGACCAATGCCAAGAACCCAAGAATTAGAGGAGAGGTGGATGATAAATATCAGTACTCGGCGGAGAACAAAGACAACTGTGTTCATGGATGGATTAGCTTTGATACTGAGCCCCACACTGGCTTCTGGGTTATAGCACCAAGTAATGAGTTTCGTACTGCTGGGCCCCACAAGCAGGATCTCACTTCTCATGTTGGCCCCACCTCTCTTGCTATGTTTGTGAGCACTCATTACGCTGGCACAAGTGTGTCAATTAATTTTGAAGAAGGGGAGACATACAAGAAGGTATTTGGCCCTATTTTTGTCTATCTTAACTCTGCTTCCAGCAAGGAGAATTTAGATTATCTCTGGTCTGATGCTGTTCGACAGTTCAATAAGGAAGTCAGAAGCTGGCCCTATGATTTCCCTCGTTCTCCAGATTTCATTCTACCCAATCAACGAGGAACAGTAAATGGACAATTACAAGTCCGAGATTGGTTCAACAAGGGATGGGGAATCATAAATGCTAAGTTTGCTTATGTTGGTTTAGCTCTGCCTGGAGAAAATGGATCATGGCAGAGAGAAAGCAAGGGTTATCAATTCTGGACTCAAGCTGATGGGAATGGCTATTTTGAAATCAAACACGTAGTACCAGGGGACTATAATTTGTATGCTTGGGTTCCTGGCTTTATTGGTGATTACAGATACAATGATACAATTACCATCAAACCAGGGGGTGTCATTAAATTGGGTTCAGTTGTATATAGCCCTCCAAGGAATGGTCCTACCATATGGGAAATTGGTGTCCCAGATCGCTCAGCCAGGGAGTTATACATACCAGAACCTGACCCTAAGCTCGTGAACAGATTGTACCAGAATCATCCCAGAGACAAGTTTAGACAATATGGTTTGTGGGAACGTTACACTGACTTATATCCAGAGAAAGATCTAGTTTATAAAGTTGGCGTCGATATGCATGAGAATAACTGGTTTTTCGCACATGTTGCAAGAAGGACAGGAAATCAAACATACCAACCAACGACGTGGCAGATTCAATTTGACCTTGACGATGACGCATTCTCATCATCAGGAAACTACACGCTTCAAGTGGCCTTAGCAGCAGCAAATGATGCTAAGTTGCAGGTTTGGTTCAATGATGCGAGAGTCGTTAATCCGCACTACGAGACACCGAGGATGGGAAAAGACAATGCAATAGCGAGGCATGGCATTCATGGATTGTATAGTTTGTTTAGTGTTGAAGTGGCAAGTGATCGATTTAAAAGGGGAAACAATATTATCTTTGTGAAGCAGTCCGAAGCCTTAGGTTCATTTCAAGGTGTTTTGTATGATTATCTCCGTTTAGAAAGACCTCCAATTATTGGAAGATTGTGA 2031 0.4175 MWWFGMTVQLCFLFSIGFSEGSTSIRYALLKNNLTQASSSPAVKLYQNQNQVVIDNGIVQVTLSNPEGFVLAISYNGIDNVLEAQNENQNRGYLDVVWSNEGGGGFQKIGGTKFSVIENTEDQVEVSFLREWTHSMNGSVPIKIDMRYIMRKGNSGYYSYAIFERPEGFPSVQVFQIRLVYKLRQDKFNYMAISRNRQRVMPTAEDRNSGQKLAYPEAVLLTNAKNPRIRGEVDDKYQYSAENKDNCVHGWISFDTEPHTGFWVIAPSNEFRTAGPHKQDLTSHVGPTSLAMFVSTHYAGTSVSINFEEGETYKKVFGPIFVYLNSASSKENLDYLWSDAVRQFNKEVRSWPYDFPRSPDFILPNQRGTVNGQLQVRDWFNKGWGIINAKFAYVGLALPGENGSWQRESKGYQFWTQADGNGYFEIKHVVPGDYNLYAWVPGFIGDYRYNDTITIKPGGVIKLGSVVYSPPRNGPTIWEIGVPDRSARELYIPEPDPKLVNRLYQNHPRDKFRQYGLWERYTDLYPEKDLVYKVGVDMHENNWFFAHVARRTGNQTYQPTTWQIQFDLDDDAFSSSGNYTLQVALAAANDAKLQVWFNDARVVNPHYETPRMGKDNAIARHGIHGLYSLFSVEVASDRFKRGNNIIFVKQSEALGSFQGVLYDYLRLERPPIIGRL 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1012 676 Pfam Polysaccharide lyase family 4, domain II 391 462 IPR029413 -
Mibi12g1012 676 CDD RGL4_C 478 668 - -
Mibi12g1012 676 Gene3D - 42 342 IPR014718 GO:0030246
Mibi12g1012 676 Gene3D - 473 667 - -
Mibi12g1012 676 SUPERFAMILY Galactose-binding domain-like 473 668 IPR008979 -
Mibi12g1012 676 Gene3D - 364 463 - -
Mibi12g1012 676 Pfam Rhamnogalacturonate lyase family 35 233 IPR010325 -
Mibi12g1012 676 CDD RGL4_M 366 465 IPR029413 -
Mibi12g1012 676 FunFam Rhamnogalacturonate lyase B 364 463 - -
Mibi12g1012 676 SUPERFAMILY Starch-binding domain-like 363 464 IPR013784 GO:0030246
Mibi12g1012 676 CDD RGL4_N 50 333 - -
Mibi12g1012 676 Pfam Polysaccharide lyase family 4, domain III 476 667 IPR029411 -
Mibi12g1012 676 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 47 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1012 Mibi-ChrMibi12 25022738 25030213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1012 39 671 Polysaccharide Lyase AT1G09910 53.375 0.0 690