Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0988 ATGGAATCATCTGAGAAGCACAGAAGAGAATTTTCCGGCGATGATCAGGAATCACCAAGAGGAATACTTGAAATCCCAGTTTCAGGAACAGAGTCTGATCACAGTGGAAGTAGCAGCAGAAGCTTCAGCTCAAACTCACCGGAGAAATCAATGGAGCAGGAGAGAGTATTACAGCCATGGAAGGCGATGATAGAGTCATGGAAGAAGAAGTCAGTACAGAGAATATCTGTGATTTCATTAATTGCATCGAGCTATGAGATGTCGAGGAAAAAAAGCTTGAGGAAGAGGAGAATGGAACGGATTCGAAGTGCAGAAGAAGGGATTAATCTGGGAGATATACCTACGAAACTTTCATGGAGGAACTTCGATTACACAGAGTTGCAAGCTGCAACAGATAATTTCAATCCTGAGAACCTGATTGGACAAGGTGGGCATGCAGAAGTCTACAGAGGACGCTTACTAGATGGTCGACTAGTGGCAGTGAAGAGGCTAATGAAGAAGGAGAAGGAAAATGAGGACAGAGCTGGCGATTACTTATCAGAGCTAGGCATTATTGCCCACATAAACCACCCAAATGCTGTGCGTTTGGTTGGGTTTGGGGTCAACAATGGTTTCTACTTTGTATTGCAATTAGCCCCACGTGGCAGCCTTTCTTCTCTGCTCTTTGGGTCTCAGATTTTCCACATTTCAGGTTCTGAATGCTTGGAGTGGAAGATAAGGTTCAAAGTAGCCATTGGTGTGGCACAGGGCTTGCAGTACCTGCATCATGATTGCCAAAGACGAATCATTCACAGAGACATTAAGGCCTCCAACATATTACTAAACGAAAATTATGAAGCTGAGATTTCAGATTTTGGACTCGCGAAATGGCTTCCAGAGAATTGGACTCACCATGTTGTCTTCCCAATAGAAGGCACATTCGGGTATTTGGCTCCAGAGTATTTTATGCATGGAATTGTGGATGAGAAGACTGATGTATTCGCCTTCGGGGTTTTGCTGCTGGAACTCATTACAGGCCGTCGTGCGATCGATTCATGCAGCAAGCAAAGTCTTGTCCTCTGGGCAAAACCACGACTAGAAGAACACAATGTGGAGGAATTAGTAGACCCAAGATTAGAAGAAGCTTATGATTCCACTGAATTGAAGAGGACCATGCTTACTGCTTCAATGTGCCTCCACCATTCATCCTCCCACCGTCCATACATGAAACAGGTTGTGCCGCTGCTGAAGGGTGAAGAGGGACTCGTTGATATTAAGCAGAAATCAGCATCAATGAGATCCATCTTGTTAGATGCCAGTGATCTTGAAGAATATACTTGCTCTACTTACTTGAATGATCTCAATCGTCACAGGCAACTAGTCATGGAGTGA 1371 0.4435 MESSEKHRREFSGDDQESPRGILEIPVSGTESDHSGSSSRSFSSNSPEKSMEQERVLQPWKAMIESWKKKSVQRISVISLIASSYEMSRKKSLRKRRMERIRSAEEGINLGDIPTKLSWRNFDYTELQAATDNFNPENLIGQGGHAEVYRGRLLDGRLVAVKRLMKKEKENEDRAGDYLSELGIIAHINHPNAVRLVGFGVNNGFYFVLQLAPRGSLSSLLFGSQIFHISGSECLEWKIRFKVAIGVAQGLQYLHHDCQRRIIHRDIKASNILLNENYEAEISDFGLAKWLPENWTHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAIDSCSKQSLVLWAKPRLEEHNVEELVDPRLEEAYDSTELKRTMLTASMCLHHSSSHRPYMKQVVPLLKGEEGLVDIKQKSASMRSILLDASDLEEYTCSTYLNDLNRHRQLVME 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0988 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Mibi12g0988 456 ProSitePatterns Protein kinases ATP-binding region signature. 140 162 IPR017441 GO:0005524
Mibi12g0988 456 MobiDBLite consensus disorder prediction 30 52 - -
Mibi12g0988 456 Gene3D Transferase(Phosphotransferase) domain 1 213 427 - -
Mibi12g0988 456 Gene3D Phosphorylase Kinase; domain 1 112 209 - -
Mibi12g0988 456 PANTHER OS08G0249100 PROTEIN 6 426 - -
Mibi12g0988 456 Pfam Protein kinase domain 137 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi12g0988 456 MobiDBLite consensus disorder prediction 1 54 - -
Mibi12g0988 456 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 213 423 - -
Mibi12g0988 456 SUPERFAMILY Protein kinase-like (PK-like) 115 409 IPR011009 -
Mibi12g0988 456 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 112 211 - -
Mibi12g0988 456 SMART serkin_6 134 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi12g0988 456 MobiDBLite consensus disorder prediction 1 17 - -
Mibi12g0988 456 ProSiteProfiles Protein kinase domain profile. 134 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0988 Mibi-ChrMibi12 24596938 24601580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0988 121 455 Trihelix Transcription Factor Family AT1G70460 40.816 3.88e-71 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Mibi12g0988 Pkinase 8.5e-39 CL0016