Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0985 ATGGAAGCCACCACCACCCAAACAGAGAAGATATATGTTGCTGTCAGTAATGATCTTCAAGATGGAACCAAAACCTTGAATTGGGCTCTCAACAAATGGAAATCTCAGCCTATTTCCATTGTTATTCTCTATGTCACTCACAATACTTCCAAGGATCATGTTAATACCCCATTTGGGAAACTCCCAGCAAAATCTGTGAACGATGAGATGTTACCAGCTCTCAGGAAACAAGAGCAAGATAAAATCAACAAACTTCTTTCCAAGTACATAGCTTTCTGTGGCAAGGTACCAGCTGAACTACTTGAAGACAAGAAATTTGATGAACCTATCCAAAAACGCATCCTAGACATGATTATTGGTCTAGAAATAACCAAACTTGTCATTGGATTTTCAGTGATGAAACCTTCCTGGAAATCGAGAGGTGCCATAAGCGGGTTGTTCTATATTCATCAGCATAAGCCTAAATTCTGCGATATGTTCATATTATGTGGAGGGAAACAAGTGTTCATGAGAGGACAGAACGATGAAAAGATCATGGAGGATGATAATGGGATTGTGGTTGCCAGAATGAGAGACAAGATAACATTCAAAGATTGGTTAGAGAAATTGTTGCCTGAGAGAAACAACTTAGTGGATTCCCCAGATTGTTCTTCTTCATCAACAAGTATGGAATCCCCTGCAGGTTCACAGAATCAGTGGGAAATCTATCTCCAAGAGATTGAAACTTATTTCCAGGATTTGTTGTCTTCTTCCAACACAAATATTGATGGTGAACAAATTAGCCTTGAGCTTCAAGAAAGTGACGTCTCGGGGATTAGTGGAATTGAGCCAGATGATGTCTGGGAAAAGAACAATTCCAATAATCCGAGGGGGAAAAGAATTGAGATACTAAAAAGAAAACTGGAGGAGGCACGTAAGATGATTCAACTGAAGAGGAAAGAAGCCAAGGATCAAAGTGATAGACATGCAAAAGCTGAATGGGCTATTTGTTTATGCAACACTCGGGCTCAAGAGCTTGAAAGCAAAATCAAGGAAGAAATGAACATGAAGGAGGAGTTAGCAAAAGAATTGGAAGCAGAAAGAGAAACCATATATGAAACCAGACGTGACATTGAAGAAAGCAGAAAAAGGTTAAGCTCACTATTGGAGCTTCAACTAGAGCTATCAAACAAACTCCATCACTCCACACAAGCAAGGTCACAAGCTGAAATCCAACTAGAGAATGCGTCAAATACAAGGTTGGAGATGGTGGCCGACATAGACCAACTTAGGAGACAAAGAGATGTGCTTTATAGAAGGATTGAATTTTGCAAAGATAAGGATGCTATAGGAATGGCGGCTAAGTTGTCGGAACCTAGTTTCAGTTTCAGAGAATACACGACTGAAGAGATTCGATTGGCCACCGATGACTTCTCCGATCGCCTCATGTTGAAGTCTGGCAGCGGCGGCCACCAGACACATGTTTATAGAGGAAAGATCAATCACTCCACCGTAGCCATAAAGATGCTCACTTCCACTTACAGCTTGTCTGCACAAGAATTCCAAGCTAAGGTGAGACTTCTTGGAGGCATTCGGCATCCTCAAGTGGTGGCTATGGTGGGCTTTTGCACTGAGCGAAAATGCATAGTTCTAGAATATATGAACAATGGTAGCCTCAGGGATATGCTATTCTCTACGAGAAGAAACAGGGCCTTACGATGGCAAGACAGAATCAGAATAGCCACTGAAGTTTGTTCGGGCCTGGGCTTTCTTCATTCTGCCCAGCCCAAACCATTCATACATGGCCACCTAACTCCTTCAAGTATCCTTCTTGATCGCAACCTTGTGGCAAAGATCAAAGGTTTTGGGTCAAACGAAGGCAACCCACAATCCGACGTAAGGGCCTTTGGGTTTTTGATAATGCATTTGCTCACAGGAAGAAACTGGGCCGGCCTAGTTGAAGAGGAGATGATGATGGGAGAAGCTTTAGTGAGGGTTTTGGATGAGAGGGCCGGGCCTTGGCCATTGAATGTGGCCCAGAAGCTAGCAGACCTAGCCGTGAAGTATGTGGGCTTTCCAGATGGGCCTAGGCCCAGTGAAGGGTTAAGCATGGGGGATGTAATGTTGGAACTAAATGAGATAAGAAGAGAGGCAAATGAGGAAGTTGCAAGAGGAGAGTCATCAAGATTTAGCGGAGTTGTAGATAAAGAAGACTTGATGGATGTGCCCAATGCTTTTCTTTGTCCCATACTTCAGGAGGTGATGAAGAACCCACACGTGGCAGGGGATGGGTTTTCGTATGAATTAGAAGCAATAGAGGAATGGGTTGGTTCGGGGCATGATAGATCGCCAATGACAAACGCAAGGCTGCCTCACTTGTTCTTTACTCCTAATCGTTCCCTTCGTTCCCTAATTCAGGACTGGCAAACCAAAAGATCTTCTCAGTTTCTGAATTAG 2436 0.4319 MEATTTQTEKIYVAVSNDLQDGTKTLNWALNKWKSQPISIVILYVTHNTSKDHVNTPFGKLPAKSVNDEMLPALRKQEQDKINKLLSKYIAFCGKVPAELLEDKKFDEPIQKRILDMIIGLEITKLVIGFSVMKPSWKSRGAISGLFYIHQHKPKFCDMFILCGGKQVFMRGQNDEKIMEDDNGIVVARMRDKITFKDWLEKLLPERNNLVDSPDCSSSSTSMESPAGSQNQWEIYLQEIETYFQDLLSSSNTNIDGEQISLELQESDVSGISGIEPDDVWEKNNSNNPRGKRIEILKRKLEEARKMIQLKRKEAKDQSDRHAKAEWAICLCNTRAQELESKIKEEMNMKEELAKELEAERETIYETRRDIEESRKRLSSLLELQLELSNKLHHSTQARSQAEIQLENASNTRLEMVADIDQLRRQRDVLYRRIEFCKDKDAIGMAAKLSEPSFSFREYTTEEIRLATDDFSDRLMLKSGSGGHQTHVYRGKINHSTVAIKMLTSTYSLSAQEFQAKVRLLGGIRHPQVVAMVGFCTERKCIVLEYMNNGSLRDMLFSTRRNRALRWQDRIRIATEVCSGLGFLHSAQPKPFIHGHLTPSSILLDRNLVAKIKGFGSNEGNPQSDVRAFGFLIMHLLTGRNWAGLVEEEMMMGEALVRVLDERAGPWPLNVAQKLADLAVKYVGFPDGPRPSEGLSMGDVMLELNEIRREANEEVARGESSRFSGVVDKEDLMDVPNAFLCPILQEVMKNPHVAGDGFSYELEAIEEWVGSGHDRSPMTNARLPHLFFTPNRSLRSLIQDWQTKRSSQFLN 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0985 811 ProSiteProfiles U-box domain profile. 734 808 IPR003613 GO:0004842|GO:0016567
Mibi12g0985 811 Pfam U-box domain 735 805 IPR003613 GO:0004842|GO:0016567
Mibi12g0985 811 Gene3D Transferase(Phosphotransferase) domain 1 547 620 - -
Mibi12g0985 811 SUPERFAMILY RING/U-box 730 808 - -
Mibi12g0985 811 PANTHER OS02G0152300 PROTEIN 11 800 - -
Mibi12g0985 811 SUPERFAMILY Protein kinase-like (PK-like) 452 704 IPR011009 -
Mibi12g0985 811 CDD RING-Ubox_WDSUB1_like 739 780 - -
Mibi12g0985 811 ProSiteProfiles Protein kinase domain profile. 471 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi12g0985 811 SMART Ubox_2 738 801 IPR003613 GO:0004842|GO:0016567
Mibi12g0985 811 Coils Coil 294 321 - -
Mibi12g0985 811 Coils Coil 336 374 - -
Mibi12g0985 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 733 809 IPR013083 -
Mibi12g0985 811 Coils Coil 406 440 - -
Mibi12g0985 811 Gene3D Phosphorylase Kinase; domain 1 446 546 - -
Mibi12g0985 811 Pfam Protein tyrosine and serine/threonine kinase 483 616 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0985 Mibi-ChrMibi12 24556947 24562776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0985 4 808 U-box Gene Family AT5G65500 47.202 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Mibi12g0985 PK_Tyr_Ser-Thr 6e-23 CL0016