Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0910 ATGTCAAGCAACTGTTCAGAGGAATTTGGTACCATCGATAGTGGTAATGGAGTGACTAAAATCATATTCATATGCAGAAGAATATCCCTGTCGGTTTCTTCTTACATGAAGGGCTGTTCTGTATTGGGGTCAGTATTGTTGGAGAGGATTATAAGAGCTTTCGCCCCTTTTCCTTTTCCAAAGCTTGTATTCTGACAGGGTAGTGTTTGTTTGCGAGATGATGGTGGTGTGTCTTCAGAAGAAGATTTCAGTGGTGAAGGTGGAGAAGCTGATCTGGATGGTCAAGCCAAGGGTGAAGATCGAGAACTTAAGGATATGCTTTTACGCAAGTTTGGGGATCGTATTGGCTCTTTGAAATTAGGTTTCTCTAAAAAGAAGAAGAAAGGTAAGCTTCCCAAAGAAGCGAGGCAAGCACTGTTTGATTGGTGGAGTCTTCACTACAAGTGGCCTTACCCCACGGAATCTGATAAGAAAGCTCTGGCAAAGTCAACGGGTCTAGACCAGAAGCAAATAAATAATTGGTTTATTAATCAGAGAAAGCGCCACTGGAAACCACCTGAAAACATGAGCGCCCAGTTTTCAGCCATGGATAGTCTTAGTGGAAGGTTTTTTAGTGGTGATTAA 624 0.4231 MSSNCSEEFGTIDSGNGVTKIIFICRRISLSVSSYMKGCSVLGSVLLERIIRAFAPFPFPKLVFXQGSVCLRDDGGVSSEEDFSGEGGEADLDGQAKGEDRELKDMLLRKFGDRIGSLKLGFSKKKKKGKLPKEARQALFDWWSLHYKWPYPTESDKKALAKSTGLDQKQINNWFINQRKRHWKPPENMSAQFSAMDSLSGRFFSGD 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0910 207 Pfam ELK domain 102 122 IPR005539 GO:0003677
Mibi12g0910 207 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Mibi12g0910 207 ProSiteProfiles 'Homeobox' domain profile. 122 185 IPR001356 GO:0003677
Mibi12g0910 207 CDD homeodomain 134 185 IPR001356 GO:0003677
Mibi12g0910 207 Pfam Homeobox KN domain 142 181 IPR008422 GO:0003677|GO:0006355
Mibi12g0910 207 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 89 194 - -
Mibi12g0910 207 SUPERFAMILY Homeodomain-like 123 194 IPR009057 -
Mibi12g0910 207 Gene3D - 121 197 - -
Mibi12g0910 207 SMART ELK_2 102 123 IPR005539 GO:0003677
Mibi12g0910 207 SMART HOX_1 124 189 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0910 Mibi-ChrMibi12 23406488 23412509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0910 71 205 Homeobox Transcription Factor Family AT1G23380 69.630 2.07e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mibi12g0910 Homeobox_KN 1.5e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g0910 12 23406488 23412509 Mibi10g1392 10 34600084 34606156 CCT
Mibi12g0910 12 23406488 23412509 Mibi12g0910 12 23406488 23412509 ECH