Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0902 ATGAATCAACAACTCAATGGCCCAAATCTAAAAAAACCCTATTTCATCACCACCTCACTATATATAAATCTCCACAGAGCCAAAAAAAAAACCTCCTCACCTAGGGTTTTCAATCGGCGACGGAGAACCATGCAAATCTTCGTGAAAACCCTAACGGGGAAAACCATAACCCTAGAGGTTGAATCCTCCGACACAATCGACAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAACAACGTCTCATCTTCGCAGGGAAACAGCTCGAAGATGGACGAACCCTAGCCGATTACAACATCCAGAAGGAATCTACGCTTCACTTGGTGCTTCGGCTTCGTGGTGGTGCGAAGAAGAGGAAGAAGAAGACGTACACTAAGCCTAAGAAGATTAAGCACAAGAAGAAGAAGGTTAAGCTCGCTGTTCTTCAGTTTTATAAGGTTGATGATTCTGGTAAGGTTCAGAGGTTGAGGAAGGAGTGCCCTAATGAGGAGTGTGGTGCTGGCACTTTCATGGCTAATCATTTTGATAGGCATTATTGTGGCAAGTGTGGGACCACTTATGTTTACAATAAGGGTGGGGATTAG 597 0.4456 MNQQLNGPNLKKPYFITTSLYINLHRAKKKTSSPRVFNRRRRTMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNEECGAGTFMANHFDRHYCGKCGTTYVYNKGGD 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0902 198 PRINTS Ubiquitin signature 96 117 IPR019956 -
Mibi12g0902 198 PRINTS Ubiquitin signature 54 74 IPR019956 -
Mibi12g0902 198 PRINTS Ubiquitin signature 75 95 IPR019956 -
Mibi12g0902 198 SUPERFAMILY Zn-binding ribosomal proteins 143 195 IPR011332 GO:0006412
Mibi12g0902 198 FunFam Ubiquitin-40S ribosomal protein S27a 44 122 - -
Mibi12g0902 198 Gene3D - 122 198 IPR038582 -
Mibi12g0902 198 SUPERFAMILY Ubiquitin-like 29 120 IPR029071 -
Mibi12g0902 198 ProSiteProfiles Ubiquitin domain profile. 44 119 IPR000626 GO:0005515
Mibi12g0902 198 Pfam Ubiquitin family 46 117 IPR000626 GO:0005515
Mibi12g0902 198 CDD Ubl_ubiquitin 44 119 - -
Mibi12g0902 198 Gene3D - 36 121 - -
Mibi12g0902 198 SMART ubq_7 44 115 IPR000626 GO:0005515
Mibi12g0902 198 Pfam Ribosomal protein S27a 145 190 IPR002906 GO:0003735|GO:0005840|GO:0006412
Mibi12g0902 198 ProSitePatterns Ubiquitin domain signature. 70 95 IPR019954 -
Mibi12g0902 198 PANTHER UBIQUITIN 44 132 - -
Mibi12g0902 198 SMART Ribosomal_S27_2 145 190 IPR002906 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0902 Mibi-ChrMibi12 23215330 23215926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0902 44 196 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 92.157 3.09e-90 259