Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0846 ATGATTCGAAAATCTAATGATTCTGATCGCCGGATTCTGACTTTCCCGGCGGTTCATCCTTATGAGGGTATCTCTCTTCCCACACTTATCACTTCTCTATTTTCTCTCTCTCATAGGATTTGCAGTTTCAAATCCAAAGTTTTCTCTTGTAACAAGAAAAATGCCAGGAAAACCATTCGTATGATTGAGGTTCTTCAGATTTTTCTTGAAGAGATCCGAGATCATCAATGGGATTTTCTGGATTCTGTAATTCTCAGCGTGTCTGAGCTCCATTTGACTTTCCAGAAGCTTCAGTTCCTCCTTGAAGACTGCACTCATGAAGGCTCTCGTCTATATATGCTCATGGAGTCGGGTCGGGTTGCGACCCATTTTCAGGGCCTATCCAGATCCGTAATCACAGCTTTGGATGTCTTCCCTTTCAGTTCCATGGAAATTTCAGAAGAAGTTAAAGAGCAAGTTGAACTGATTCTGAAGCAAGCAAGAAAAGGCGACCTTGAAGTTGAGCCTGAAGATAAACGAGCAATGATGTGTGTTCTATCAGTTTTGGATCAATTAGAGAACTCTATCACCCCAAGTGAGAGTGACCTCAGATTGATTCTAGATCATATTGGGGTTCGGAGATGGAGTGAGTGTAACAAAGAAATCAAGTTTTTGGATGCAGAAATTGGGTATGAGAGAATGAAGGAAGAGAAGAGAAAGCTTGTTTTTTTGAGTAGTTTAATGGGGTTCATGAGTTATTGCAGATGCGTGGTGATTGAGGCTGTTGATGATGGAGAAGATGAACCAAAATCTGATTATGGGAAAGAAAGTGAGATTCAGAGTTGGTGCTTCAATCCTGATGATTTTAGATGTCCAATCTCTCTAGAAATCATGAATGATCCGGTGACTATAGAGACGGGTCATACTTATGATCGATCTTCGATTCTCAAATGGTTTAGTAGTAGTGGGAGTCTCACATGCCCCAAGACAGGGAGAAACCTTAGCAGCATCGAGCTGGTCCCTAATTTGGCGCTTCGCAGGTTGATTCATCAATACTGTTCTAAGAACAGCATTCTTGTGTCTGATCTGGGTCGAAGGAATCGTGGTGATCGTGACAACAAAACAACTTGTCAGCCTGGGAGTTTGGCAGCTCAAGAAGCCATGAAAATGCTGGCAAGTTTTCTAGGTGGAAAACTTCAAAGCAAAGAAGAGGTTGAGAGAAACAGAGCTGCTTATGAGATTCGGGTTCTTTCCAAAAGAAACATCTTCAATAGATCTTGTTTAGTGGAATCTGGTGCAATACCAAATCTGTTAAGGTTGGTGTGCTCATCGTGGAGAAATCCTACTATGCAAGAAAACGCCATGGCAGCTCTTATGAACCTCTCGAAACACCCCAAAAGCAGAAGCATTATGGTTATGAATGGGGGTTTAGAACTGATTGTGAGTGTTTGTAAGAAAGGAATGAAGTTAGAATCTCGCCATCACGCCGCTGCAACGCTGTTTTACCTTGCTTCGGATGAGGAGAATCGGAGATTGATTGGGGAGGAGCCGGAAGCAATCCCATCTTTGATCAATCTACTCAAAGATGGCACTGATAGAGGCAAAAAGAATGGCCTGGTTGCTATATATGGCCTCCTTTTCTACTCTGAAAATCATAAGAAAGTGATTGAAGCAAAGGCAATTCAATTGCTAGTTAGCATCATAAAAACCTGTGAAAGAGAGGAACTAGTCACAGATTCACTATCAGTTCTGGCAATTCTAGCTGAGAAAAGTGTTGGAGCAACAATGGCAATCCTTCAAAATGGATCTTTGAATCAAATCATTGAGATTTTGAAATCTTCAACTTCAAGGGTTGGGAAGGAGCAATGTGTGTGTTTATTGCTTTCTCTGGCAATAAATGGAGGGGCAAATGTGGTCTCTCTTCTAGTGAAAAGCCCTTCTCTAATGGGATCCTTGTATTCCTTACTCAGTGAAGGCACATTAAGAGCAAGCAAGAAGGCAAGTGCTCTCATTAGGGTCCTCCATGATTTTTGTGAAAGGAGACCCTCTGGATTCAAAGCTTCTTCAGTTTTTCCACAAGAACAATTCATTCACGTTTGGTAA 2082 0.4169 MIRKSNDSDRRILTFPAVHPYEGISLPTLITSLFSLSHRICSFKSKVFSCNKKNARKTIRMIEVLQIFLEEIRDHQWDFLDSVILSVSELHLTFQKLQFLLEDCTHEGSRLYMLMESGRVATHFQGLSRSVITALDVFPFSSMEISEEVKEQVELILKQARKGDLEVEPEDKRAMMCVLSVLDQLENSITPSESDLRLILDHIGVRRWSECNKEIKFLDAEIGYERMKEEKRKLVFLSSLMGFMSYCRCVVIEAVDDGEDEPKSDYGKESEIQSWCFNPDDFRCPISLEIMNDPVTIETGHTYDRSSILKWFSSSGSLTCPKTGRNLSSIELVPNLALRRLIHQYCSKNSILVSDLGRRNRGDRDNKTTCQPGSLAAQEAMKMLASFLGGKLQSKEEVERNRAAYEIRVLSKRNIFNRSCLVESGAIPNLLRLVCSSWRNPTMQENAMAALMNLSKHPKSRSIMVMNGGLELIVSVCKKGMKLESRHHAAATLFYLASDEENRRLIGEEPEAIPSLINLLKDGTDRGKKNGLVAIYGLLFYSENHKKVIEAKAIQLLVSIIKTCEREELVTDSLSVLAILAEKSVGATMAILQNGSLNQIIEILKSSTSRVGKEQCVCLLLSLAINGGANVVSLLVKSPSLMGSLYSLLSEGTLRASKKASALIRVLHDFCERRPSGFKASSVFPQEQFIHVW 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0846 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 469 IPR000225 GO:0005515
Mibi12g0846 693 CDD RING-Ubox_PUB 282 324 IPR045210 -
Mibi12g0846 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 353 IPR013083 -
Mibi12g0846 693 Gene3D - 354 676 IPR011989 -
Mibi12g0846 693 FunFam RING-type E3 ubiquitin transferase 278 351 - -
Mibi12g0846 693 Pfam U-box domain 279 350 IPR003613 GO:0004842|GO:0016567
Mibi12g0846 693 PANTHER U BOX DOMAIN-CONTAINING 52 667 - -
Mibi12g0846 693 SUPERFAMILY RING/U-box 278 353 - -
Mibi12g0846 693 SUPERFAMILY ARM repeat 386 667 IPR016024 -
Mibi12g0846 693 SMART Ubox_2 281 345 IPR003613 GO:0004842|GO:0016567
Mibi12g0846 693 SMART arm_5 413 456 IPR000225 GO:0005515
Mibi12g0846 693 SMART arm_5 541 582 IPR000225 GO:0005515
Mibi12g0846 693 SMART arm_5 457 498 IPR000225 GO:0005515
Mibi12g0846 693 SMART arm_5 499 540 IPR000225 GO:0005515
Mibi12g0846 693 ProSiteProfiles U-box domain profile. 277 352 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0846 Mibi-ChrMibi12 22314537 22316618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0846 1 693 U-box Gene Family AT1G60190 45.028 0.0 561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g0846 12 22314537 22316618 Mibi12g0846 12 22314537 22316618 ECH