Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0839 ATGGCTCCCTCACCTCAGCTTCCCTGCGACTGCGACGGCTTCTGTATGATCTGCAAGACGAAACCTTTAGAAGAAGAAAAGCTAACATGCAAAACCTGCGTTTCCCAATGGCATGTTAACTGTCTCTCTCTTCGCCCAGAGACTATGGCTGAAACAATTAAGTGGGAATGCCCTGATTGTTCATCTCCACCGTCCGATTTCCCTCCATCAACGGCTGGTAAATCTGTCGTCGTTGATGGTTCCAGTGACCTCATGGCTGCGATCCGTGCGATTGAAGCCGATGATTCTCTCACCGAAGCTGAAAAGGCGAAGAAAAGACAGCGACTTTTGAGTGGCAAGGCTGGAACTGAAGGAGACGATGAAAGTGGTGGTGGTGATGGGAAGAAGAAGGATGTTTTGGATATTCTTAGTGGGACTTTGAATTGCTCTTTCTGTATGCAGTTACCTGAGAGGCCTGTCACGACTCCATGTGGCCACAACTTCTGTCTGAAATGCTTTCAGAAATGGATCGCTCAAGGAAAACAAACATGTGCCAAGTGTCGTAGCACTATCCCTTCCAAAATGGCAAGTCAACCTCGTATTAACTCTGCACTTGTAATTGCTATCCGTATGGCAAAAGTATCCAAAAACATAGGTTCAGGAGATACCTCTAGAGTTTATCAAGTCCTTCATAACCAGGATAGACCCGACAAGGCTTATACTACTGAGCGTGCTCAAAAGAGTGGCAAAGCAAACGCTTGCAGTGGAAAGATTTTTGTAACCGTACCTCAGGATCATTTTGGTCCAATCCCGGCTGAGAATGATCCAGTGAGGAATCAAGGTGTGTTGGTTGGTGAATGTTGGGAAGACAGACTTGAATGCCGGCAATGGGGTGTTCACTTTCCTCATGTTAGTGGTATTGCTGGACAATCGAACTATGGTGCACAATCAGTAGTTCTATCTGGTGGTTATGTTGATGATGAGGATCATGGAGAGTATTTTCTTTATACTGGAAGTGGTGGTAGAGACTTAAGTGGAAATAAGCGAACAAGCAACACACAATCATTTGATCAGACCTTTGAAAAGTATAATTTGGCCTTAAAAGTTAGCTGTTTAAAAGGTTATCCAGTTCGAGTTGTAAGATCTCACAAGGAAAAGCGATCGGCATATGCTCCTGAGAAAGGATTACGATATGATGGCGTTTATCGAATTGAAAAATGTTGGCGGAAGCAGGGATTGCAGGGCTTCAAAGTTTGTCGATACCTGTTTGTTAGAGTTGACAATGAACCGGCCCCATGGACAAGTGATGATCGTGGAGATGTTCCCCGAGATTTGCCAGTAATTCCCGAGTTGGCCAAGGCTACAGACTTGGTTGAAAGAAACGTTAAACAGAAACCATCATGGGATTTTGATGAGAAAGAATCTTGTTGGAAGTGGAAAATACCACCACCTCCCAGTCAAAAACCTGTTAAAAGTATGGACCCCAATGAGGTAAAAAGGTCAAGGAGGGAGATAAGGAAAGCCCAAAATGTTTCAATCAGGGAAAGATTGCTGAAAGGATTTGGTTGCCTTATCTGTAAAGAGGTTATGGCTACTCCTGTGACGACACCCTGTGCTCATAATTTCTGTAAGTCATGTTTGGAAGGTGCATTTGCTGGTCAGTCTTTTGTGAAGGAAAGAAGCAGGGGCGGAAGATCTCTGCGGACTCAAAAGAATGTGATGAAATGCCCTTCTTGCCCTACTGATATTTCTGAATTTCTTCAAAACATTCAGGTTAATACAGAATTGCTGGGCTTAATCGAATCATTGAAAGCTGAGGCTGAAGAAAAAGGAGATGGAAGTGAGGATGAAGGTGGAGCAGAGGGAGACACTGATGATGCCGAGGCAACGATGGGTGAAGATAAGGATACTTCGGTTGAGAAGCTTAATGAGTCAGCTGAGGAATCTGATGCTAGCAAACTAGAGCCTAACGAACTTGGAGTGACCAATCGTGTAGCCAAGGGTAAGTGCAAAAGGAAGAGAGCTGATGCCAAAGAAGTTTCTCCCAAAGCTGGTAAAACCAAAAAGGTTGAGGATGATGATGGAAATGATTCGCCAGCAAGTCCTCTTCATTTGTCAGCTGACCATTAA 2109 0.4429 MAPSPQLPCDCDGFCMICKTKPLEEEKLTCKTCVSQWHVNCLSLRPETMAETIKWECPDCSSPPSDFPPSTAGKSVVVDGSSDLMAAIRAIEADDSLTEAEKAKKRQRLLSGKAGTEGDDESGGGDGKKKDVLDILSGTLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIAQGKQTCAKCRSTIPSKMASQPRINSALVIAIRMAKVSKNIGSGDTSRVYQVLHNQDRPDKAYTTERAQKSGKANACSGKIFVTVPQDHFGPIPAENDPVRNQGVLVGECWEDRLECRQWGVHFPHVSGIAGQSNYGAQSVVLSGGYVDDEDHGEYFLYTGSGGRDLSGNKRTSNTQSFDQTFEKYNLALKVSCLKGYPVRVVRSHKEKRSAYAPEKGLRYDGVYRIEKCWRKQGLQGFKVCRYLFVRVDNEPAPWTSDDRGDVPRDLPVIPELAKATDLVERNVKQKPSWDFDEKESCWKWKIPPPPSQKPVKSMDPNEVKRSRREIRKAQNVSIRERLLKGFGCLICKEVMATPVTTPCAHNFCKSCLEGAFAGQSFVKERSRGGRSLRTQKNVMKCPSCPTDISEFLQNIQVNTELLGLIESLKAEAEEKGDGSEDEGGAEGDTDDAEATMGEDKDTSVEKLNESAEESDASKLEPNELGVTNRVAKGKCKRKRADAKEVSPKAGKTKKVEDDDGNDSPASPLHLSADH 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0839 702 Pfam RING-type zinc-finger 516 570 IPR027370 -
Mibi12g0839 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 207 IPR013083 -
Mibi12g0839 702 SUPERFAMILY RING/U-box 510 598 - -
Mibi12g0839 702 SMART G9a_1 265 422 IPR003105 -
Mibi12g0839 702 SUPERFAMILY PUA domain-like 244 436 IPR015947 -
Mibi12g0839 702 CDD PHD_SF 14 60 - -
Mibi12g0839 702 CDD RING-HC 142 180 - -
Mibi12g0839 702 Gene3D - 241 437 IPR036987 -
Mibi12g0839 702 SMART PHD_3 14 61 IPR001965 -
Mibi12g0839 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 494 612 IPR013083 -
Mibi12g0839 702 SUPERFAMILY FYVE/PHD zinc finger 6 64 IPR011011 -
Mibi12g0839 702 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
Mibi12g0839 702 MobiDBLite consensus disorder prediction 665 691 - -
Mibi12g0839 702 ProSitePatterns Zinc finger PHD-type signature. 9 60 IPR019786 -
Mibi12g0839 702 ProSiteProfiles YDG domain profile. 270 418 IPR003105 -
Mibi12g0839 702 MobiDBLite consensus disorder prediction 102 130 - -
Mibi12g0839 702 Pfam SAD/SRA domain 272 421 IPR003105 -
Mibi12g0839 702 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 90 209 - -
Mibi12g0839 702 MobiDBLite consensus disorder prediction 605 623 - -
Mibi12g0839 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 62 IPR013083 -
Mibi12g0839 702 MobiDBLite consensus disorder prediction 599 702 - -
Mibi12g0839 702 ProSiteProfiles Zinc finger RING-type profile. 516 572 IPR001841 -
Mibi12g0839 702 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 6 610 IPR045134 -
Mibi12g0839 702 MobiDBLite consensus disorder prediction 624 647 - -
Mibi12g0839 702 Pfam Zinc finger, C3HC4 type (RING finger) 142 180 IPR018957 GO:0046872
Mibi12g0839 702 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 241 436 - -
Mibi12g0839 702 ProSitePatterns Zinc finger RING-type signature. 531 540 IPR017907 -
Mibi12g0839 702 SMART ring_2 142 180 IPR001841 -
Mibi12g0839 702 SMART ring_2 15 60 IPR001841 -
Mibi12g0839 702 SMART ring_2 516 572 IPR001841 -
Mibi12g0839 702 SUPERFAMILY RING/U-box 134 188 - -
Mibi12g0839 702 MobiDBLite consensus disorder prediction 474 494 - -
Mibi12g0839 702 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0839 Mibi-ChrMibi12 22199770 22204149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0839 1 607 C2H2 Transcription Factor Family AT5G39550 61.765 0.0 739