Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0797 ATGCTTAGGTTGCGTTCTGCTACTCTATTTGCTTACCTTCACCGTCGACCAACACTTCTTCAGAAGTACGGGAAGATGTCAGTTCTAATTGTCACGAGCTTAGGAGACATAGTGGTAGATTTGTACTCCGATAAATGCCCCTTGACGAGTAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGATGCCTATTTCACACAGTTCAGAAAGATTTCACTGCTCAGACTGGTGATCCAACTGGAATTGGGAGCGGCGGTGATTCTGTGTATAAATTTCTCTATGGTGATCAAGCTCGCTTTTTTAGTGATGAGATTCATATTGATTTAAAGCATTCTAAGACTGGCACAGTTGCCATGGCTAGTGCCGGAGAGAATCTGAATGCTTCCCAATTCTACATCACTCTGCGTGATAATCTTGATTACCTTGATGGAAAGCACACTGTTTTTGGCGAGGTAGCTGAAGGACTTGATACTTTGACTAGAATAAACGAGGCTTACGTGGATGAGAGTGGGAGACCATATAAAAATATCCGAATCAAGCACACTTACATCTTAGATGATCCTTTTGACGATCCTTCTCAACTAGCTGAGTTTATTCCTGACTCTTCACCTGAGGGAAAGCCAAAAGATGAGATTCTTGATGAAGTGCGGCTTGAAGATGATTGGGTGCCCATGGATGAACAATTAGATCCCACAGAGCTTGAGGAGGTTGTTAGGTCAAAGGAAGCACATTCCAGGGCTGTTGTACTTGAGAGTATAGGAGATATTCCTGATGCTGAGATCAAGCCTCCTGACAATGTGCTATTTGTTTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACTATATTCTCGCGCTTTGGAACCGTTGTGTCGGCTGAAATAATCCGTGACCAGAAGACTGGTGACAGTTTATGCTATGCTTTTATAGAGTTCGAGGACAAGCTGGCGTGTGAACAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTCAGTCAGAGTGTCGCAAAACTATGGTCACAATATCGGCGTAAAGATCAAACTGGTAAAGGTAATGGCTGCTTCAAATGTGGTTCTTCAGATCATATTGCCAAAGATTGCACTGGGGATGCTAATAACCAAACAACAAAATATGTCTTGAAGGACAGCAATGCCCAACGTGGTGGAGATGATGCAAGGTATGAAATGGTTTTCGATGGAGATGGTGAAGACAGTCCGGGGCAAGGAAAGGGACATAGAAGGCATGACAAGGATGAACCAATCGTGAGAAAAAGTATGCACAGGAGTCACAGAGATCAAGATAACAGAGATGGTTATAAAGACAGAGGAGGAAGATATGAAAGAGGTGTGAGAGATGTGGATTCCCGTGTGGAGAGGAAAGATAGGGATAAGTATATGGATAGACGTAGAGATGATGATGGCTATGGTCAGAAAGATGATAGAGAATTGAGGAAGAGATATGACGATGATGGTCGGAAAGATGATCGAGACTCTAGGAAGAGATACGAGGATGATAGCCGGTCAGAGAGACGGAGCAATGCAGATTATCGGAAGAAAATAGATCCTAGCCACGTGGAGAGAAGGGATGACAAGGACAAGGAGTATAGCAGAGATAGGGAGAAGAGAAAGAAGGAAGGTTCTGCTGAAGATGGCCATGAAGATAGGAGGAGAATGGATGACAGAGATCATAGGCCAAAACAGGAAGATCGAGGCAGGCATGACTCGAAGAATGAGTCCAAAGAAAGGAAGAGACATGCAGATGATGATGATGAAGATTACAGAAATCGAAGGGAAGAACGTGGCCAAAGAAGGAAAGATGTGGAGTTTGACAATGATCGGCATAGGAGACATCGCAGTGACAGGAGATGA 1905 0.4299 MLRLRSATLFAYLHRRPTLLQKYGKMSVLIVTSLGDIVVDLYSDKCPLTSKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGIGSGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDNLDYLDGKHTVFGEVAEGLDTLTRINEAYVDESGRPYKNIRIKHTYILDDPFDDPSQLAEFIPDSSPEGKPKDEILDEVRLEDDWVPMDEQLDPTELEEVVRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDQKTGDSLCYAFIEFEDKLACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQTGKGNGCFKCGSSDHIAKDCTGDANNQTTKYVLKDSNAQRGGDDARYEMVFDGDGEDSPGQGKGHRRHDKDEPIVRKSMHRSHRDQDNRDGYKDRGGRYERGVRDVDSRVERKDRDKYMDRRRDDDGYGQKDDRELRKRYDDDGRKDDRDSRKRYEDDSRSERRSNADYRKKIDPSHVERRDDKDKEYSRDREKRKKEGSAEDGHEDRRRMDDRDHRPKQEDRGRHDSKNESKERKRHADDDDEDYRNRREERGQRRKDVEFDNDRHRRHRSDRR 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0797 634 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 29 184 IPR002130 GO:0000413|GO:0003755
Mibi12g0797 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 340 IPR000504 GO:0003723
Mibi12g0797 634 CDD cyclophilin_RRM 29 194 IPR035538 -
Mibi12g0797 634 SMART rrm1_1 269 342 IPR000504 GO:0003723
Mibi12g0797 634 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 132 IPR002130 GO:0000413|GO:0003755
Mibi12g0797 634 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 146 161 IPR002130 GO:0000413|GO:0003755
Mibi12g0797 634 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 67 79 IPR002130 GO:0000413|GO:0003755
Mibi12g0797 634 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 56 IPR002130 GO:0000413|GO:0003755
Mibi12g0797 634 CDD RRM_PPIL4 265 347 - -
Mibi12g0797 634 FunFam Peptidyl-prolyl cis-trans isomerase 207 348 - -
Mibi12g0797 634 Gene3D - 11 198 IPR029000 -
Mibi12g0797 634 Pfam Zinc knuckle 365 380 IPR001878 GO:0003676|GO:0008270
Mibi12g0797 634 SUPERFAMILY Cyclophilin-like 26 204 IPR029000 -
Mibi12g0797 634 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 26 529 IPR035542 -
Mibi12g0797 634 Gene3D - 217 350 IPR012677 -
Mibi12g0797 634 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 32 186 IPR002130 GO:0000413|GO:0003755
Mibi12g0797 634 FunFam Peptidyl-prolyl cis-trans isomerase 26 197 - -
Mibi12g0797 634 SUPERFAMILY RNA-binding domain, RBD 254 364 IPR035979 GO:0003676
Mibi12g0797 634 Gene3D - 358 439 - -
Mibi12g0797 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 346 IPR000504 GO:0003723
Mibi12g0797 634 SMART c2hcfinal6 365 381 IPR001878 GO:0003676|GO:0008270
Mibi12g0797 634 MobiDBLite consensus disorder prediction 407 634 - -
Mibi12g0797 634 ProSiteProfiles Zinc finger CCHC-type profile. 366 379 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0797 Mibi-ChrMibi12 21041628 21049277 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0797 32 191 U-box Gene Family AT5G67530 40.000 3.85e-30 123