Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0771 ATGATGTCTTCTCGAGGGGAAGCCCCGGGTCAACCACAGATGATAGGTGGAGGTGTTCAGAAACTGACAACTAATGATGCCTTACTCTATCTCAAGGCTGTCAAGGAAATGTTCCATGACAATAGGGAAAAATATGACGACTTTTTGGAAGTCATGAAAAATTTCAAGGCACAGAGAATCGATACTGCTGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAAGGATCTAATTTTGGGATTCAACACCTTCTTGCCAAAAGGATATGAAATCACGCTTCCACTGGAGGATGAACAACCTCTTCAAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAAATTAAGGCTCGATTTCAGGGCGATGATCATGTATACAAGTCTTTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCACTGAGGTCTATCAGGAGGTTGCTGCTCTTTTCCAAGACCACCCAGACCTGCTTGTTGAGTTCACTCACTTTCTTCCAGATGCTTCAGCAGCAGCTTCTGCTCATTATGCCCAATCTGCTCGGAACTCTTTGCTTCGCGATAGGACCTCTGCAATGCCGGCAGTGCGGCAAATGCATGACAAGAGGGAAAGGACCATGTCACATGACCGTGACCATAGTGTTGATCATCCTGATCCAGATGACAAAGGTTATATGAGGACGGAAAATGAGCTGAGAAGGCGTGGTGAGAAGGATAAGGATCGTAGAGAAGATAGAGACAGGAAAGAGCGGGAACGGGATGATAGAGATTATGAGCATGATAATAACCGGGAATACAACATGCGGCATTTCCCCCACAAACTGAAACATAGTGGTAGGGGTGATGATATTAGCGCTGAACCTCTTCATCAAGGAGGTGATGGTGATGAACATTTTGGTCTGCGCAGTATGTCATCGCCTGGTGATGATAAAAGTTCTGTGAAAAGTATGTATAGTCAAGAGTTTGCTTTCTGTGATAAAGTGAAGGAGAAATTACGGAATCCTGATGATTATCAGGAATTTTTGAAGTGCCTGCATATCTATAGCAGAGAAATAATTACACGAGAAGAACTGCAGTCATTGGTGGGTGATTTACTGGGAAAATATCCTGACCTTATTGAGGGGTTTAATGAATTTTTGGCAAGATGTGAGAAGAATGGACATGTATCAAAGTCAGTGAAGGCAGAAGACCGGGATAGGGATAGGGATAGGGACAGGGATAGGGATAGAGATCGTGGTCGTAGTCGGGATGATGAGGCTAAAGAAAGGGATCGTGAATACCGAGAAAGGGACAGATCTGCTGCTATTGCCAACAAGGATGTTTCAGGTTCTAGGTTGTCTATGTTATCCTCCAAGGATAAGTATATGTACAAACCTATAAATGAGTTGGACCTGTCTAACTGTGAGCGATGCACTCCTAGTTACCGGCTCCTTCCAAAAAACTACCCAATACCTGTGGTTAGCCAGAGAACAGAGCTTGGTTCTGAAGTATTAAATGATCATTGGGTGTCTGTGACTTCTGGAAGCGAAGACTATTCTTTTAAACACATGCGCAAAAACCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTGCATTGAACGTTTATATGGTGACCATGGGCTTGATGTAATGGAAGTGTTGAGAAAGAATGCGCCTTTAGCTTTGCCAGTTATATTGACCCGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCCAAGAACTATCACAAATCCCTTGATCATCGAAGCTTCTACTTTAAGCAACAAGATATGAAAAGCTTGAGCACTAAAGAAATTAGTGAGAAGAAACGTAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCCATTCTTCCAAATTTGGAATATGAGTTTTCTGATCCAGATATTCATGAAGATCTGTATCAGCTCATAAAATATTCATGTGGAGAAGTCTGTACGACTGAGCAGTTAGATAAAGTTATGAAGATTTGGACAACATTTATAGAGCCCATGCTTGGTGTTCCTTCACGTCCCCAAGGTGCTGAGGATACAGAAGATGTTGTCAAGGCTAAGAACAATTCCGTCAAAAGTGGTGCTGCAAATGTTGTAGAGAGTAATGGTAGTCCAGGTAGTTCTAAACAATTAAGTGCTTCTAGAAATGAGGGTGAGAGTATTCCATTAGAACAGTCAAATGCTTGCAAATCTTGGCAAATGAATGGAGATGGTGGGGTTAAAGAAGATAGCCCTGTTGATACAGAGCATACAAATCGGAAGACTGAAACTCTGGGCAGCAGTACGCAGCTTTGTAAATTGCTAGCTAGTGCATCCATGCCTGATGGAGTATCAGGAGTTAATAAGCAAGAGCATCCTAATGATCGGTTAGTGAATGCTAGTGCCTCACTAGCCTCTGGAATGGAGCACAGTAGTGGAAGAACATGCACTGATAATGCATCAGGTTGGCAATTTAGGATGATGACACTTCGTGCTTATTACTTCACTGTTCTACTTTAA 2574 0.4204 MMSSRGEAPGQPQMIGGGVQKLTTNDALLYLKAVKEMFHDNREKYDDFLEVMKNFKAQRIDTAGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPLQKKPVEFEEAINFVNKIKARFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAALFQDHPDLLVEFTHFLPDASAAASAHYAQSARNSLLRDRTSAMPAVRQMHDKRERTMSHDRDHSVDHPDPDDKGYMRTENELRRRGEKDKDRREDRDRKERERDDRDYEHDNNREYNMRHFPHKLKHSGRGDDISAEPLHQGGDGDEHFGLRSMSSPGDDKSSVKSMYSQEFAFCDKVKEKLRNPDDYQEFLKCLHIYSREIITREELQSLVGDLLGKYPDLIEGFNEFLARCEKNGHVSKSVKAEDRDRDRDRDRDRDRDRGRSRDDEAKERDREYRERDRSAAIANKDVSGSRLSMLSSKDKYMYKPINELDLSNCERCTPSYRLLPKNYPIPVVSQRTELGSEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDMKSLSTKEISEKKRKEDDVLLAIAAGNRRPILPNLEYEFSDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFIEPMLGVPSRPQGAEDTEDVVKAKNNSVKSGAANVVESNGSPGSSKQLSASRNEGESIPLEQSNACKSWQMNGDGGVKEDSPVDTEHTNRKTETLGSSTQLCKLLASASMPDGVSGVNKQEHPNDRLVNASASLASGMEHSSGRTCTDNASGWQFRMMTLRAYYFTVLL 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0771 857 Gene3D Paired amphipathic helix 26 88 IPR036600 GO:0006355
Mibi12g0771 857 MobiDBLite consensus disorder prediction 715 758 - -
Mibi12g0771 857 PANTHER SIN3B-RELATED 20 824 IPR039774 GO:0003714
Mibi12g0771 857 SUPERFAMILY PAH2 domain 20 89 IPR036600 GO:0006355
Mibi12g0771 857 FunFam Paired amphipathic helix SIN3-like protein 105 176 - -
Mibi12g0771 857 ProSiteProfiles PAH domain profile. 321 390 IPR003822 GO:0006355
Mibi12g0771 857 SMART hdac_interact2seq4b 474 581 IPR013194 -
Mibi12g0771 857 Pfam Sin3 family co-repressor 476 540 IPR013194 -
Mibi12g0771 857 SUPERFAMILY PAH2 domain 103 175 IPR036600 GO:0006355
Mibi12g0771 857 MobiDBLite consensus disorder prediction 397 439 - -
Mibi12g0771 857 Gene3D Paired amphipathic helix 104 177 IPR036600 GO:0006355
Mibi12g0771 857 FunFam Paired amphipathic helix protein SIN3 319 392 - -
Mibi12g0771 857 SUPERFAMILY PAH2 domain 321 388 IPR036600 GO:0006355
Mibi12g0771 857 MobiDBLite consensus disorder prediction 283 304 - -
Mibi12g0771 857 ProSiteProfiles PAH domain profile. 106 176 IPR003822 GO:0006355
Mibi12g0771 857 FunFam Paired amphipathic helix protein Sin3 26 88 - -
Mibi12g0771 857 Gene3D Paired amphipathic helix 319 392 IPR036600 GO:0006355
Mibi12g0771 857 ProSiteProfiles PAH domain profile. 20 90 IPR003822 GO:0006355
Mibi12g0771 857 MobiDBLite consensus disorder prediction 714 777 - -
Mibi12g0771 857 MobiDBLite consensus disorder prediction 191 321 - -
Mibi12g0771 857 Pfam Paired amphipathic helix repeat 343 387 IPR003822 GO:0006355
Mibi12g0771 857 Pfam Paired amphipathic helix repeat 129 173 IPR003822 GO:0006355
Mibi12g0771 857 Pfam Paired amphipathic helix repeat 43 87 IPR003822 GO:0006355
Mibi12g0771 857 MobiDBLite consensus disorder prediction 201 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0771 Mibi-ChrMibi12 20656298 20662921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0771 16 125 WRKY Transcription Factor Family AT4G12020 50.909 4.47e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mibi12g0771 Sin3_corepress 6.4e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g0771 12 20656298 20662921 Mibi10g1283 10 32724417 32733548 CCT
Mibi12g0771 12 20656298 20662921 Mibi12g0771 12 20656298 20662921 ECH