LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi12g0723	ATGGCGGCGGGTGGAAAACTCTTTGGGGCATCCAACATGACAACACTCTTGCTCCAAAACGAAAGACTTCCTCCCTCTTCTGATGTTCTTGACTCTATCTGGGCTCACACCTCAAATCCCACTTTCACAGGATCAAAATCTATGATGAATTTCGAGAGACTTAGTGGGTGCAGAGTAACAGACCGGCCATTTATGCACGGAGTGGAGAAGGAAGAAACAGGGGAGGAAGATTATGAGGTGTGTTTTCATCAAGCTGGGAAGAAAAGGAGGTTAACGAGTGAGCAAGTTCAGTTTCTGGAGAAAAACTTTGAGGTGGAGAACAAGCTAGAACCAGAGAGGAAGGTTCAGCTAGCGAAGGAGCTTGGGTTGCAGCCAAGGCAAGTTGCTATATGGTTTCAGAACAGGAGGGCAAGGTTCAAGACCAAACAACTTGAACAAGATTATGGTAAACTGAAAGCTAGCTATGATAAACTCAAGAATGATCATGATAATCTTGTCAAGGAGAACGACAAGTTAAAGGAAGAGGTGAAATCCCTGAAAAACAGATTGAACGCGAGAGAGAAAGGGAAAGAAGATTCTCACAAATCAGAGGCAAATGCGGACCCTGGAGATTCAGAAGCAGTGAATTCAGCAGGAGAGCCACAAGAAAATGCAACCAAAGACGACGAAACAACGGCAGCTACGGCGGCGAAGGGAATAACGATGTGGAAGAATCTAGAAGACGCGAATTCATCGGCAAAAAGCGATGTGTTAGATTCGGAGCCAGCGGATTCGTCGCCGGCGGCGGAACAATCGGATTTCTCTCAGGAGGAAGAAGATGAAAATCTAATGAGGAACAATCTTCTGAATCTGGCATGTTTTCCGAAGGTGGAAGAAGATGGATGCTATGATGATCCTCCTGTAGATTGTTGTAACAATTTTGGATTCCCTGTTGAAGATCAGACGTTCTGTTTTTGGCCTTACTGA	966	0.4513	MAAGGKLFGASNMTTLLLQNERLPPSSDVLDSIWAHTSNPTFTGSKSMMNFERLSGCRVTDRPFMHGVEKEETGEEDYEVCFHQAGKKRRLTSEQVQFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEQDYGKLKASYDKLKNDHDNLVKENDKLKEEVKSLKNRLNAREKGKEDSHKSEANADPGDSEAVNSAGEPQENATKDDETTAATAAKGITMWKNLEDANSSAKSDVLDSEPADSSPAAEQSDFSQEEEDENLMRNNLLNLACFPKVEEDGCYDDPPVDCCNNFGFPVEDQTFCFWPY	321

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi12g0723	321	Pfam	Homeobox associated leucine zipper	142	183	IPR003106	GO:0006355\|GO:0043565
	Mibi12g0723	321	Coils	Coil	141	189	-	-
	Mibi12g0723	321	Gene3D	-	82	148	-	-
	Mibi12g0723	321	MobiDBLite	consensus disorder prediction	181	225	-	-
	Mibi12g0723	321	Pfam	Homeodomain	87	140	IPR001356	GO:0003677
	Mibi12g0723	321	PRINTS	Lambda-repressor HTH signature	113	122	IPR000047	GO:0003677
	Mibi12g0723	321	PRINTS	Lambda-repressor HTH signature	122	138	IPR000047	GO:0003677
	Mibi12g0723	321	CDD	homeodomain	87	143	IPR001356	GO:0003677
	Mibi12g0723	321	MobiDBLite	consensus disorder prediction	181	201	-	-
	Mibi12g0723	321	MobiDBLite	consensus disorder prediction	242	265	-	-
	Mibi12g0723	321	MobiDBLite	consensus disorder prediction	242	275	-	-
	Mibi12g0723	321	FunFam	Homeobox-leucine zipper protein HAT5	80	144	-	-
	Mibi12g0723	321	ProSitePatterns	'Homeobox' domain signature.	117	140	IPR017970	GO:0000981\|GO:0006355
	Mibi12g0723	321	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	65	230	IPR045224	GO:0003700
	Mibi12g0723	321	SUPERFAMILY	Homeodomain-like	77	144	IPR009057	-
	Mibi12g0723	321	SMART	HOX_1	85	146	IPR001356	GO:0003677
	Mibi12g0723	321	ProSiteProfiles	'Homeobox' domain profile.	82	142	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi12g0723	Mibi-ChrMibi12	19162221	19164188	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi12g0723	44	203	Homeobox Transcription Factor Family	AT3G01470	53.125	6.28e-45	152

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Mibi12g0723		Homeodomain	2e-16	CL0123