LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi12g0700	ATGGGTAACTGCTTACATCCTTCGAAAATGAATTTAGATCAACACACCGGATCCACCATTTCTGGTGGAATATCCAAAACTGGTGCATCATTATCACCATCAGCTGCTTCAAGCTCCATGTTACATGTCCAACCGTGCAGACCAGATGGAAAGAAGGCGTACGGATTAAGCGTCGTTCTTCCGGTGCCGGCGCCGGAGACGGAGGGCGAGATCTTGTCGTCACCGAATCTGAAGGCCTTCAGCTTCAATGAGCTCAAGAATGCAACCAAGAATTTCAATACTGAAAACCTTCTTGGAGAAGGTGGATTTGGCTTTGTTTATAAGGGATGGATTGATTTGCGCACTTCCACTGCTTCAAAACCCGGTTCAGGATGCGTCGTTGCTGTCAAGAAGCTTAAGCCTCAAGTTTTTCAAGGCCATAAGCAGTGGCTTACTGAAGTGAAGTACCTTGGCCGGCTGCATCATCCTAACTTAGTCAAACTAATTGGCTACTGTTTGGAAGGAGAGAACAGATTATTGGTCTATCAGTTTATGCCCAAAGGCAGCTTAGAGAATCATCTCATAAAAAGTGAACCTTTGCAATGGTCTGTGAGAATTAAAGTGGCCATTGGAGCTGCAAGGGGGCTTTCTTTTCTTCACAATGCTGAATCGCGAGTTATATTCCGCGATATTAAATCTTCCAATATCCTACTTGACGCAGAGTACAATGCCAAGCTCTCAGATTTCGGGCTAGCAAAGGAGGGGCCTTCTGGGGACAACACTCATGTGTCTACTCAAGTGTTGGGTACTCATGGATATGCAGCTCCTGAGTATGTCGCCACAGGTCAATTAAGAGCAAATTGTGATGTATATGGCTTTGGAGTGGTGTTACTAGAACTCCTGACTGGAAGACGGGCTTATGACAAAACAAGAGGTGTTGTGGAACAAAACTTAGTAGAATGGGCAAAACCATATCTGAATGACAAACGAAAATTATTTCGGATCATGGACACCAAATTAGGTGGCCGATATCCACAACATGCAGCCTACATGGTAGCTGATTTGGCTCTTCAATGTCTTAAATTTGAAGCCAAGGCTAGGCCTTCTATGACTGAGGTTTTAGCTACATTGGAACAAATCAATGAAGTTATTAGAAACAGTGATTGCAATAACAACAACATTGTTGCATGA	1170	0.4385	MGNCLHPSKMNLDQHTGSTISGGISKTGASLSPSAASSSMLHVQPCRPDGKKAYGLSVVLPVPAPETEGEILSSPNLKAFSFNELKNATKNFNTENLLGEGGFGFVYKGWIDLRTSTASKPGSGCVVAVKKLKPQVFQGHKQWLTEVKYLGRLHHPNLVKLIGYCLEGENRLLVYQFMPKGSLENHLIKSEPLQWSVRIKVAIGAARGLSFLHNAESRVIFRDIKSSNILLDAEYNAKLSDFGLAKEGPSGDNTHVSTQVLGTHGYAAPEYVATGQLRANCDVYGFGVVLLELLTGRRAYDKTRGVVEQNLVEWAKPYLNDKRKLFRIMDTKLGGRYPQHAAYMVADLALQCLKFEAKARPSMTEVLATLEQINEVIRNSDCNNNNIVA	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi12g0700	389	Pfam	Protein kinase domain	93	368	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi12g0700	389	SUPERFAMILY	Protein kinase-like (PK-like)	70	373	IPR011009	-
	Mibi12g0700	389	Gene3D	Transferase(Phosphotransferase) domain 1	178	388	-	-
	Mibi12g0700	389	SMART	serkin_6	92	377	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi12g0700	389	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	178	384	-	-
	Mibi12g0700	389	MobiDBLite	consensus disorder prediction	1	31	-	-
	Mibi12g0700	389	CDD	STKc_IRAK	98	373	-	-
	Mibi12g0700	389	ProSiteProfiles	Protein kinase domain profile.	92	377	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi12g0700	389	PANTHER	OS01G0588500 PROTEIN-RELATED	40	374	-	-
	Mibi12g0700	389	MobiDBLite	consensus disorder prediction	9	31	-	-
	Mibi12g0700	389	Gene3D	Phosphorylase Kinase; domain 1	63	177	-	-
	Mibi12g0700	389	ProSitePatterns	Protein kinases ATP-binding region signature.	98	131	IPR017441	GO:0005524
	Mibi12g0700	389	FunFam	Serine/threonine-protein kinase BIK1	62	177	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi12g0700	Mibi-ChrMibi12	18511610	18516348	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi12g0700	66	370	Glycoside Hydrolase	AT3G07070	50.000	1.35e-101	305

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Mibi12g0700		Pkinase	3.3e-46	CL0016