LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi12g0697	ATGCAACATATGAAGCAGAGACTGCATCATCAAGTCAATGAAGAATCCAAGAAGAAGGAGCGTCATATTGTCTCTTGGACTCAAGAGGAGGATGATATACTTAGAGAGCAGATTAGCATTCATGGAACAGACAATTGGACAATTATTGCATCTAAATTCAAGGACAAAACGACAAGACAATGCAGGAGAAGGTGGTACACATATTTAAATTCTGATTTCAAGAAAGGAGGGTGGTCACCAGAGGAAGATATGCTGTTATGTGAGGCTCAGAAGATATTTGGCAATAGATGGACAGAAATAGCTAAGGTGGTTTCAGGCAGAACTGATAACGCTGTGAAAAACCGCTTCACCACACTTTGCAAAAAGAGAGCAAAATATGAAGCCTTGGCCAAAGAGAACAGCCCTTCATTGATCAATTCAAACAACAAAAGGACCATTTTCCAACAAGTATACAGTACAGATGCAGTGGCAGATGCTGCAGCATCGATTAAGAAGATGAGGGCCCACATCCATAATGCTGCATCAAGGATAAACTATGAAGACAGATCACATAAACCATTTGGAACACCGCCTAGTCAGCAACCTAGAGTGCCATTTGCTGTATTATCTAATTTCAAGGATACTAACAGCTTGCTAGACCAACGTCCTATCTGCAGTGCCAAGTTCGGCAATTACGCCCAAAATAACAAGAATGAAGGAACATTCCTCAAAAAGGATGATCCAAAGATAAATGTGTTGATGCAGCAAGCAGAATTATTGAGCTCACTTGCAGTGAAAGTTAATACAGAGAACATGGACCAGAGTCTTGAGAATGCATGGAAGGTTCTGCAAAATTTTCTGAACCGAACGAACAAATCAGATCTTTCAAGATATAAGATCACTGATTTACAGCTTGAAAACCTCAAAAATATGGAGGAGGACAAGAAGAGTGGTCGCGAGGGGAGCCAACCATATTCAAGGCAACCAGAGCTATATGAGGACTCTCCAAGCAGCTCTGAATATAGTACAGGATCAATTATACTGGCCCATTCAGCTTGTGATGATTTGGAACATTCACTGCATCAAAATGTTGGAACTGAAGGGAAACCTGCAGAAAGTGAGGAGAAAAAAGGAATTAGTAATTGTGAGAAACAAGTTCTTTTTGCTTCAACTGCAGATCAAGATGTCTTGCCATCTTGTGAGGAAAAGATAAACGATGATTTCATTGTTTCTGTCTTGTCAAGTACAGAGTTCAATTCCCCTATTCAGGTTACTCCTCTGTTCAGATCCTTGGCTGCAGGAATTCCAAGCCCACAGTTTTCAGAAAGTGAAAGGAACTTTCTGATGAAAACATTCGGAATGGAATCCCCATCTCAAAATCAAAGTGCAAAAGCCTCACAACCACCACCCTGTAAAAGAGCGTTACTACAAAGTCTATAA	1419	0.4052	MQHMKQRLHHQVNEESKKKERHIVSWTQEEDDILREQISIHGTDNWTIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTLCKKRAKYEALAKENSPSLINSNNKRTIFQQVYSTDAVADAAASIKKMRAHIHNAASRINYEDRSHKPFGTPPSQQPRVPFAVLSNFKDTNSLLDQRPICSAKFGNYAQNNKNEGTFLKKDDPKINVLMQQAELLSSLAVKVNTENMDQSLENAWKVLQNFLNRTNKSDLSRYKITDLQLENLKNMEEDKKSGREGSQPYSRQPELYEDSPSSSEYSTGSIILAHSACDDLEHSLHQNVGTEGKPAESEEKKGISNCEKQVLFASTADQDVLPSCEEKINDDFIVSVLSSTEFNSPIQVTPLFRSLAAGIPSPQFSESERNFLMKTFGMESPSQNQSAKASQPPPCKRALLQSL	472

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi12g0697	472	MobiDBLite	consensus disorder prediction	304	334	-	-
	Mibi12g0697	472	Gene3D	-	76	148	-	-
	Mibi12g0697	472	ProSiteProfiles	Myb-like domain profile.	25	69	IPR001005	-
	Mibi12g0697	472	SMART	sant	22	71	IPR001005	-
	Mibi12g0697	472	SMART	sant	74	122	IPR001005	-
	Mibi12g0697	472	MobiDBLite	consensus disorder prediction	315	334	-	-
	Mibi12g0697	472	CDD	SANT	25	69	IPR001005	-
	Mibi12g0697	472	Pfam	Myb-like DNA-binding domain	26	86	-	-
	Mibi12g0697	472	Gene3D	-	11	74	-	-
	Mibi12g0697	472	SUPERFAMILY	Homeodomain-like	23	116	IPR009057	-
	Mibi12g0697	472	ProSiteProfiles	Myb-like domain profile.	70	120	IPR001005	-
	Mibi12g0697	472	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	74	124	IPR017930	-
	Mibi12g0697	472	MobiDBLite	consensus disorder prediction	1	21	-	-
	Mibi12g0697	472	FunFam	Transcription factor MYB124	18	74	-	-
	Mibi12g0697	472	PANTHER	MYB PROTEIN-RELATED	25	220	-	-
	Mibi12g0697	472	CDD	SANT	78	119	IPR001005	-
	Mibi12g0697	472	FunFam	Transcription factor MYB124	77	145	-	-
	Mibi12g0697	472	MobiDBLite	consensus disorder prediction	7	21	-	-
	Mibi12g0697	472	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	18	73	IPR017930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi12g0697	Mibi-ChrMibi12	18401654	18406293	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi12g0697	64	472	MYB Transcription Factor Family	AT1G14350	51.208	7.67e-124	364

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Mibi12g0697		Myb_DNA-bind_6	1e-15	CL0123