Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0685 ATGGCCAAAAAACACTTTTTCTTCTCCACTTTCTTTACAATTCTGTTCACCATTTTCCCGCCATGTATGTCTGTAAGGATAGAAACAGAGGCCCTCCTTCAGTTCAAGAAGCATTTGAAGGACCCTTTGGATTCTTTGGCTTCCTGGACAGATTCTGAGTCTCCGTGTGAATTCCACGGAGTTACTTGTGATAGATTTTCTGGGGAAGTCACAGAAATTTCGCTAGAAAATAAGTCACTTTCTGGGGAGATTTTCCCATCAATTTTTGCGCTCCAGAATCTCAGAGTTTTGTCGCTTGCATCAAATTTTATTTCTGGGAAGCTTCCATTTGAGATAAACAATTGCAGCAACCTTAAAGTTTTGAACTTTACGGAAAATGAGATGGTTGGGATTATACCAGACTTGTCTGGGATGAGAAATCTCAAAGTTCTTGACCTCTCTGCAAATTACTTTTCTGGTAGATTCCCAAGCTGGGTTGGAAATCTGACTGGTCTGGTTTCTCTGGGGTTAGGGGAAAATGAGTATATTGAGAGTGAAATTCCTGAGGCTCTTGGGAATCTGAAGAACTTGACTTGGCTCTATCTTGGTGGTTCTCATTTGAGAGGAGAGATTCCAGAATCAATTTATGAAATGAAGGCTCTGGAGACACTGGATATTTCTAGAAACATGATATCGGGGAAACTCTCCAAGTCAATTTGGAAGTTGGGAAATCTTAGTAAGATTGAGCTTTTCGCGAATAATTTAACAGGGCAAATCCCAGCTGAGCTGGCAAACTTGACCAAGCTTGAGGAGATTGACATTTCTATGAATCATATGTATGGTGAATTGCCAGAGGTGATTGGTACTATGAAGAATTTGGTTGTTTTTCAACTCTATGAAAACAACTTTTCTGGAGAACTTCCTGCTGGGTTTGGAGATATGCAACATCTTGTTGGATTCTCCATTTATCGAAACAACTTCTCAGGGAAAATTCCAGAACATTTTGGCCAATTTTCGCCACTGGATAGCATTGATATATCAGAGAATCAATTTTCAGGTGATTTTCCAAAGTTTTTGTGTGAAAACAGAAAGTTGAAATTTTTGCTTGCTTTACAAAATAATTTCTCAGGTGAATTGCCTGAGACTTATGTTGCATGTAAATCATTGGAGAGATTCAGGGTAAGCAGTAATCGCTTGTCTGGAAAAATTCCAAATGAGCTGTGGGCACTTCCATTTGTAAAGATAATTGATTTGGCTGACAATAATTTTGATGGTGGTATATCTCCAGAAGTTGGGCTTTCTTATAGGTTAAGCCAGTTAGTTCTAACAAATAACAAGTTTTCGGGTAAGCTTCCTTCGCAACTTGGTAAGCTGGTGAATTTGGAGAAGCTATATTTGAGCAACAACAATTTCTATGGTGAAATACCAGCTGAAATTGGAGCTTTGAAGCAGTTATCCTCTTTTCATCTTGAAGATAATTCATTAACTGGATCAATACCTGCAGAACTTGGCAATTGTGCAAGGCTAGTGGACTTGAATCTTGCTCAGAATTTTCTAACTGGCACTATCCCTCAGTCAGTTTCACTTATGAGCTCATTGAACTCTCTTAACCTATCTGGCAACAAACTTTCTGGCTCAATCCCAGAAAACTTAGTGTCAATGAAATTGAGCTCAATTGATTTTTCCAAAAACCAGTTGAGTGGCAGAATTCCGAACAATCTTTTAATTATCGGTGGTGGTGAAGCTTTTGTTGGAAACCCAGGACTTTGTGTTGAACAAAATTCAAGAACTCTTATGAATTCTGAATTCAACATTTGCACAAGCATGCATGGCCAGAAAAGGGTTGGTGCTGATAAGATAGTAATCCTATGTGTCATTACTTCTGCCTTGGTTGTAGTGTTGGCCGTGTTGCTTTTGAGTTATGGAAGCTTCAAGTATGAAAAAGCTGACCTGGAGAAAAAGTTGCAAGACCAAAAGGAAACAGATTCTAAATGGAGAATTGCTACTTTTCACCAAGTTGATCTTGATGTGAGTGAAATATGCAATTTGGATGAAGACAATTTGATTGGAACTGGTGGTACTGGAAAGGTATATCGAATTGACTTGAAGAAAAATGGTTCCACAGTGGCTGTAAAACAACTATGGAAAGGAGATGGTGTAAAAATTTTGGCTGCAGAAATGGATACTATGGGGAAAATCAGGCATAGAAATATACTTAAGCTTTATGCTTGTTTGTTTAAAGGAGGATCAAACTATTTAGTTTTAGAGTACATGCCAAATGGTAATCTTTTTGAAGCTCTTCACGGAGAGATAAAGGGTGGGAAACCAGCATTGGATTGGTGCCAGAGATATAAAATTGCGCTGGGAACTGCAAAAGGAATTGCCTATTTACATCATGATTGTTGTCCACCAATCATTCACAGAGACATAAAATCCAGTAACATTTTGCTAGATGAGGAATATGAGGCGAAAATTGCTGATTTTGGGGTTGCCAAATTTGCGGAAAAAAATGATCAACAGTTGGGTTTTAGCTGTCTTGCTGGTACTCATGGTTATATTGCTCCTGAGCTTGCATATACACGCGAAGTCAGTGAAAAGAGCGATGTGTATAGCTTTGGAGTGGTGCTACTAGAATTACTTACAGGAAGGGAACCCATCGAAGAGGATTATGGAGAAGGGAAGGATATTGTATATTGGGTTATGACTAACCTGGATAACCGTGAAAGCGCCATCAAGATCCTTGATGATAAAATAGCATCTGAGTCTGTTGAAGATGAAATGATCAAGGTATTGAAGGTTGCTATCCACTGCACAACCAAGCTCCCTTCTTTGCGCCCTACTATGAGAGATGTTGTCAAGATGCTTATTGACGCTTATTCTAGCCCTTTTCAATCTCCAAACAGTGATTTTGAGAAAGATATTAAGAATTTTATGTAG 2916 0.3875 MAKKHFFFSTFFTILFTIFPPCMSVRIETEALLQFKKHLKDPLDSLASWTDSESPCEFHGVTCDRFSGEVTEISLENKSLSGEIFPSIFALQNLRVLSLASNFISGKLPFEINNCSNLKVLNFTENEMVGIIPDLSGMRNLKVLDLSANYFSGRFPSWVGNLTGLVSLGLGENEYIESEIPEALGNLKNLTWLYLGGSHLRGEIPESIYEMKALETLDISRNMISGKLSKSIWKLGNLSKIELFANNLTGQIPAELANLTKLEEIDISMNHMYGELPEVIGTMKNLVVFQLYENNFSGELPAGFGDMQHLVGFSIYRNNFSGKIPEHFGQFSPLDSIDISENQFSGDFPKFLCENRKLKFLLALQNNFSGELPETYVACKSLERFRVSSNRLSGKIPNELWALPFVKIIDLADNNFDGGISPEVGLSYRLSQLVLTNNKFSGKLPSQLGKLVNLEKLYLSNNNFYGEIPAEIGALKQLSSFHLEDNSLTGSIPAELGNCARLVDLNLAQNFLTGTIPQSVSLMSSLNSLNLSGNKLSGSIPENLVSMKLSSIDFSKNQLSGRIPNNLLIIGGGEAFVGNPGLCVEQNSRTLMNSEFNICTSMHGQKRVGADKIVILCVITSALVVVLAVLLLSYGSFKYEKADLEKKLQDQKETDSKWRIATFHQVDLDVSEICNLDEDNLIGTGGTGKVYRIDLKKNGSTVAVKQLWKGDGVKILAAEMDTMGKIRHRNILKLYACLFKGGSNYLVLEYMPNGNLFEALHGEIKGGKPALDWCQRYKIALGTAKGIAYLHHDCCPPIIHRDIKSSNILLDEEYEAKIADFGVAKFAEKNDQQLGFSCLAGTHGYIAPELAYTREVSEKSDVYSFGVVLLELLTGREPIEEDYGEGKDIVYWVMTNLDNRESAIKILDDKIASESVEDEMIKVLKVAIHCTTKLPSLRPTMRDVVKMLIDAYSSPFQSPNSDFEKDIKNFM 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0685 971 SMART LRR_typ_2 91 115 IPR003591 -
Mibi12g0685 971 SMART LRR_typ_2 451 475 IPR003591 -
Mibi12g0685 971 SMART LRR_typ_2 187 211 IPR003591 -
Mibi12g0685 971 SMART LRR_typ_2 523 547 IPR003591 -
Mibi12g0685 971 SMART LRR_typ_2 138 162 IPR003591 -
Mibi12g0685 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Mibi12g0685 971 FunFam leucine-rich repeat receptor-like protein kinase TDR 751 959 - -
Mibi12g0685 971 CDD STKc_IRAK 682 948 - -
Mibi12g0685 971 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 211 949 - -
Mibi12g0685 971 Pfam Leucine rich repeat 139 200 IPR001611 GO:0005515
Mibi12g0685 971 Gene3D Ribonuclease Inhibitor 176 275 IPR032675 -
Mibi12g0685 971 Gene3D Ribonuclease Inhibitor 276 377 IPR032675 -
Mibi12g0685 971 Gene3D Ribonuclease Inhibitor 378 467 IPR032675 -
Mibi12g0685 971 FunFam Receptor-like protein kinase HSL1 285 592 - -
Mibi12g0685 971 FunFam Probable inactive receptor kinase RLK902 25 182 - -
Mibi12g0685 971 ProSitePatterns Protein kinases ATP-binding region signature. 682 705 IPR017441 GO:0005524
Mibi12g0685 971 FunFam Leucine-rich receptor-like protein kinase family protein 666 750 - -
Mibi12g0685 971 Pfam Protein kinase domain 678 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi12g0685 971 Gene3D Phosphorylase Kinase; domain 1 675 754 - -
Mibi12g0685 971 SUPERFAMILY L domain-like 52 345 - -
Mibi12g0685 971 SUPERFAMILY Protein kinase-like (PK-like) 673 948 IPR011009 -
Mibi12g0685 971 Gene3D Ribonuclease Inhibitor 24 175 IPR032675 -
Mibi12g0685 971 Gene3D Ribonuclease Inhibitor 468 591 IPR032675 -
Mibi12g0685 971 ProSiteProfiles Protein kinase domain profile. 676 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi12g0685 971 SUPERFAMILY RNI-like 266 565 - -
Mibi12g0685 971 SMART serkin_6 676 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi12g0685 971 Gene3D Transferase(Phosphotransferase) domain 1 755 966 - -
Mibi12g0685 971 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0685 Mibi-ChrMibi12 17948748 17952997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0685 13 951 Receptor kinase-like Gene Family AT1G72180 57.384 0.0 1081
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mibi12g0685 Pkinase 1e-48 CL0016